Experiment: R2A with copper (II) chloride 0.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS23795 and RR42_RS23800 are separated by 331 nucleotides RR42_RS23800 and RR42_RS23805 are separated by 407 nucleotides
RR42_RS23795: RR42_RS23795 - hypothetical protein, at 662,441 to 666,097
_RS23795
RR42_RS23800: RR42_RS23800 - hypothetical protein, at 666,429 to 666,728
_RS23800
RR42_RS23805: RR42_RS23805 - hypothetical protein, at 667,136 to 669,109
_RS23805
Position (kb) 666
667 Strain fitness (log2 ratio) -2
-1
0
1 at 665.469 kb on + strand, within RR42_RS23795 at 665.469 kb on + strand, within RR42_RS23795 at 665.470 kb on - strand, within RR42_RS23795 at 665.470 kb on - strand, within RR42_RS23795 at 665.548 kb on - strand, within RR42_RS23795 at 665.637 kb on + strand, within RR42_RS23795 at 665.637 kb on + strand, within RR42_RS23795 at 665.660 kb on + strand, within RR42_RS23795 at 665.661 kb on - strand, within RR42_RS23795 at 665.661 kb on - strand, within RR42_RS23795 at 665.715 kb on + strand, within RR42_RS23795 at 665.739 kb on + strand at 665.740 kb on - strand at 665.813 kb on + strand at 665.813 kb on + strand at 665.813 kb on + strand at 665.814 kb on - strand at 665.871 kb on + strand at 665.871 kb on + strand at 665.910 kb on - strand at 665.910 kb on - strand at 666.106 kb on + strand at 666.117 kb on + strand at 666.117 kb on + strand at 666.118 kb on - strand at 666.131 kb on + strand at 666.151 kb on + strand at 666.152 kb on - strand at 666.152 kb on - strand at 666.169 kb on + strand at 666.177 kb on - strand at 666.208 kb on + strand at 666.282 kb on - strand at 666.282 kb on - strand at 666.282 kb on - strand at 666.282 kb on - strand at 666.340 kb on + strand at 666.340 kb on + strand at 666.340 kb on + strand at 666.360 kb on + strand at 666.361 kb on - strand at 666.376 kb on + strand at 666.377 kb on - strand at 666.436 kb on + strand at 666.437 kb on - strand at 666.459 kb on + strand, within RR42_RS23800 at 666.459 kb on + strand, within RR42_RS23800 at 666.460 kb on - strand, within RR42_RS23800 at 666.460 kb on - strand, within RR42_RS23800 at 666.491 kb on + strand, within RR42_RS23800 at 666.524 kb on - strand, within RR42_RS23800 at 666.524 kb on - strand, within RR42_RS23800 at 666.524 kb on - strand, within RR42_RS23800 at 666.528 kb on + strand, within RR42_RS23800 at 666.529 kb on - strand, within RR42_RS23800 at 666.529 kb on - strand, within RR42_RS23800 at 666.529 kb on - strand, within RR42_RS23800 at 666.577 kb on + strand, within RR42_RS23800 at 666.577 kb on + strand, within RR42_RS23800 at 666.577 kb on + strand, within RR42_RS23800 at 666.578 kb on - strand, within RR42_RS23800 at 666.592 kb on + strand, within RR42_RS23800 at 666.593 kb on - strand, within RR42_RS23800 at 666.685 kb on - strand, within RR42_RS23800 at 666.706 kb on - strand at 666.706 kb on - strand at 666.878 kb on - strand at 666.901 kb on - strand at 666.962 kb on - strand at 666.962 kb on - strand at 666.970 kb on + strand at 666.971 kb on - strand at 667.000 kb on + strand at 667.000 kb on + strand at 667.001 kb on - strand at 667.041 kb on + strand at 667.041 kb on + strand at 667.042 kb on - strand at 667.042 kb on - strand at 667.042 kb on - strand at 667.051 kb on + strand at 667.051 kb on + strand at 667.051 kb on + strand at 667.052 kb on - strand at 667.052 kb on - strand at 667.052 kb on - strand at 667.057 kb on + strand at 667.057 kb on + strand at 667.057 kb on + strand at 667.058 kb on - strand at 667.058 kb on - strand at 667.058 kb on - strand at 667.058 kb on - strand at 667.058 kb on - strand at 667.288 kb on - strand at 667.288 kb on - strand at 667.288 kb on - strand at 667.513 kb on + strand, within RR42_RS23805 at 667.513 kb on + strand, within RR42_RS23805 at 667.659 kb on - strand, within RR42_RS23805
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with copper (II) chloride 0.25 mM remove 665,469 + RR42_RS23795 0.83 +0.2 665,469 + RR42_RS23795 0.83 -0.4 665,470 - RR42_RS23795 0.83 -0.1 665,470 - RR42_RS23795 0.83 +1.3 665,548 - RR42_RS23795 0.85 -0.4 665,637 + RR42_RS23795 0.87 -2.2 665,637 + RR42_RS23795 0.87 -0.7 665,660 + RR42_RS23795 0.88 +0.3 665,661 - RR42_RS23795 0.88 -1.3 665,661 - RR42_RS23795 0.88 +0.5 665,715 + RR42_RS23795 0.90 -1.1 665,739 + +0.0 665,740 - +0.5 665,813 + +0.7 665,813 + -0.3 665,813 + -0.3 665,814 - +0.5 665,871 + +0.2 665,871 + -0.8 665,910 - +0.1 665,910 - -1.9 666,106 + -2.0 666,117 + +0.5 666,117 + -0.8 666,118 - -0.1 666,131 + -0.2 666,151 + +0.1 666,152 - -0.6 666,152 - -1.3 666,169 + -1.3 666,177 - +1.5 666,208 + -0.5 666,282 - +0.1 666,282 - -0.4 666,282 - +0.2 666,282 - -0.4 666,340 + +0.8 666,340 + -0.3 666,340 + +0.5 666,360 + -0.5 666,361 - -0.7 666,376 + -0.9 666,377 - +0.2 666,436 + -1.8 666,437 - -1.0 666,459 + RR42_RS23800 0.10 -0.7 666,459 + RR42_RS23800 0.10 -0.2 666,460 - RR42_RS23800 0.10 -1.0 666,460 - RR42_RS23800 0.10 -0.9 666,491 + RR42_RS23800 0.21 -0.6 666,524 - RR42_RS23800 0.32 +1.1 666,524 - RR42_RS23800 0.32 -0.8 666,524 - RR42_RS23800 0.32 -1.0 666,528 + RR42_RS23800 0.33 +0.4 666,529 - RR42_RS23800 0.33 +1.4 666,529 - RR42_RS23800 0.33 -0.7 666,529 - RR42_RS23800 0.33 -0.4 666,577 + RR42_RS23800 0.49 -0.5 666,577 + RR42_RS23800 0.49 +0.9 666,577 + RR42_RS23800 0.49 +1.4 666,578 - RR42_RS23800 0.50 -0.3 666,592 + RR42_RS23800 0.54 +0.7 666,593 - RR42_RS23800 0.55 -0.7 666,685 - RR42_RS23800 0.85 +0.3 666,706 - +0.9 666,706 - -0.7 666,878 - +0.6 666,901 - -1.2 666,962 - -0.6 666,962 - -2.2 666,970 + -0.5 666,971 - +0.3 667,000 + +1.3 667,000 + +0.9 667,001 - +0.5 667,041 + +0.4 667,041 + -0.7 667,042 - -0.8 667,042 - +0.3 667,042 - -0.8 667,051 + +1.3 667,051 + +0.1 667,051 + -0.1 667,052 - +0.1 667,052 - +0.0 667,052 - -0.3 667,057 + +0.6 667,057 + +0.4 667,057 + +0.2 667,058 - +1.1 667,058 - -0.5 667,058 - -0.1 667,058 - -0.9 667,058 - +0.5 667,288 - -1.6 667,288 - +0.5 667,288 - -0.1 667,513 + RR42_RS23805 0.19 -0.6 667,513 + RR42_RS23805 0.19 -0.7 667,659 - RR42_RS23805 0.26 -1.0
Or see this region's nucleotide sequence