Experiment: R2A with copper (II) chloride 0.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS22010 and RR42_RS22015 are separated by 25 nucleotides RR42_RS22015 and RR42_RS22020 are separated by 15 nucleotides RR42_RS22020 and RR42_RS22025 are separated by 256 nucleotides
RR42_RS22010: RR42_RS22010 - histidine kinase, at 269,587 to 271,233
_RS22010
RR42_RS22015: RR42_RS22015 - histidine kinase, at 271,259 to 273,655
_RS22015
RR42_RS22020: RR42_RS22020 - hypothetical protein, at 273,671 to 273,856
_RS22020
RR42_RS22025: RR42_RS22025 - AraC family transcriptional regulator, at 274,113 to 275,090
_RS22025
Position (kb) 271
272
273
274 Strain fitness (log2 ratio) -2
-1
0
1
2 at 270.275 kb on + strand, within RR42_RS22010 at 270.535 kb on + strand, within RR42_RS22010 at 270.535 kb on + strand, within RR42_RS22010 at 270.535 kb on + strand, within RR42_RS22010 at 270.628 kb on - strand, within RR42_RS22010 at 270.628 kb on - strand, within RR42_RS22010 at 270.710 kb on - strand, within RR42_RS22010 at 270.988 kb on + strand, within RR42_RS22010 at 271.020 kb on + strand, within RR42_RS22010 at 271.090 kb on + strand at 271.091 kb on - strand at 271.168 kb on + strand at 271.168 kb on + strand at 271.168 kb on + strand at 271.231 kb on + strand at 272.790 kb on - strand, within RR42_RS22015 at 272.802 kb on + strand, within RR42_RS22015 at 272.803 kb on - strand, within RR42_RS22015 at 272.803 kb on - strand, within RR42_RS22015 at 272.960 kb on - strand, within RR42_RS22015 at 273.244 kb on - strand, within RR42_RS22015 at 273.244 kb on - strand, within RR42_RS22015 at 273.414 kb on - strand, within RR42_RS22015 at 273.846 kb on + strand at 273.847 kb on - strand at 273.902 kb on + strand at 273.916 kb on - strand at 273.936 kb on - strand at 274.017 kb on + strand at 274.018 kb on - strand at 274.018 kb on - strand at 274.162 kb on + strand at 274.275 kb on - strand, within RR42_RS22025 at 274.275 kb on - strand, within RR42_RS22025 at 274.279 kb on - strand, within RR42_RS22025 at 274.654 kb on + strand, within RR42_RS22025 at 274.654 kb on + strand, within RR42_RS22025 at 274.655 kb on - strand, within RR42_RS22025 at 274.655 kb on - strand, within RR42_RS22025
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with copper (II) chloride 0.25 mM remove 270,275 + RR42_RS22010 0.42 +0.1 270,535 + RR42_RS22010 0.58 +0.4 270,535 + RR42_RS22010 0.58 +1.1 270,535 + RR42_RS22010 0.58 +0.1 270,628 - RR42_RS22010 0.63 +0.5 270,628 - RR42_RS22010 0.63 -1.6 270,710 - RR42_RS22010 0.68 -0.3 270,988 + RR42_RS22010 0.85 -0.4 271,020 + RR42_RS22010 0.87 -0.9 271,090 + -1.4 271,091 - -2.3 271,168 + -0.4 271,168 + +0.9 271,168 + +0.1 271,231 + +0.3 272,790 - RR42_RS22015 0.64 -0.3 272,802 + RR42_RS22015 0.64 -1.0 272,803 - RR42_RS22015 0.64 +0.6 272,803 - RR42_RS22015 0.64 +0.4 272,960 - RR42_RS22015 0.71 -1.5 273,244 - RR42_RS22015 0.83 +0.5 273,244 - RR42_RS22015 0.83 +0.4 273,414 - RR42_RS22015 0.90 +0.2 273,846 + -0.1 273,847 - -0.3 273,902 + -0.2 273,916 - -1.6 273,936 - +1.7 274,017 + -1.6 274,018 - +1.3 274,018 - +1.3 274,162 + -0.6 274,275 - RR42_RS22025 0.17 -0.5 274,275 - RR42_RS22025 0.17 +0.1 274,279 - RR42_RS22025 0.17 +0.9 274,654 + RR42_RS22025 0.55 +2.1 274,654 + RR42_RS22025 0.55 -0.9 274,655 - RR42_RS22025 0.55 +0.2 274,655 - RR42_RS22025 0.55 +0.1
Or see this region's nucleotide sequence