Experiment: R2A with copper (II) chloride 0.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS20965 and RR42_RS20970 are separated by 63 nucleotides RR42_RS20970 and RR42_RS20975 overlap by 4 nucleotides
RR42_RS20965: RR42_RS20965 - transferase, at 30,936 to 32,123
_RS20965
RR42_RS20970: RR42_RS20970 - hypothetical protein, at 32,187 to 33,467
_RS20970
RR42_RS20975: RR42_RS20975 - hypothetical protein, at 33,464 to 34,282
_RS20975
Position (kb) 32
33
34 Strain fitness (log2 ratio) -1
0
1
2 at 31.438 kb on - strand, within RR42_RS20965 at 31.881 kb on - strand, within RR42_RS20965 at 31.881 kb on - strand, within RR42_RS20965 at 32.122 kb on - strand at 32.212 kb on - strand at 32.292 kb on + strand at 32.293 kb on - strand at 32.556 kb on + strand, within RR42_RS20970 at 32.676 kb on + strand, within RR42_RS20970 at 32.776 kb on + strand, within RR42_RS20970 at 32.826 kb on + strand, within RR42_RS20970 at 32.826 kb on + strand, within RR42_RS20970 at 32.827 kb on - strand, within RR42_RS20970 at 32.827 kb on - strand, within RR42_RS20970 at 32.827 kb on - strand, within RR42_RS20970 at 32.871 kb on + strand, within RR42_RS20970 at 32.872 kb on - strand, within RR42_RS20970 at 33.000 kb on + strand, within RR42_RS20970 at 33.122 kb on - strand, within RR42_RS20970 at 33.122 kb on - strand, within RR42_RS20970 at 33.147 kb on + strand, within RR42_RS20970 at 33.147 kb on + strand, within RR42_RS20970 at 33.147 kb on + strand, within RR42_RS20970 at 33.148 kb on - strand, within RR42_RS20970 at 33.628 kb on + strand, within RR42_RS20975 at 33.629 kb on - strand, within RR42_RS20975 at 33.687 kb on + strand, within RR42_RS20975 at 33.688 kb on - strand, within RR42_RS20975 at 34.151 kb on + strand, within RR42_RS20975 at 34.151 kb on + strand, within RR42_RS20975 at 34.166 kb on + strand, within RR42_RS20975 at 34.166 kb on + strand, within RR42_RS20975 at 34.167 kb on - strand, within RR42_RS20975 at 34.299 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with copper (II) chloride 0.25 mM remove 31,438 - RR42_RS20965 0.42 -0.8 31,881 - RR42_RS20965 0.80 -0.8 31,881 - RR42_RS20965 0.80 -0.9 32,122 - +0.5 32,212 - -0.8 32,292 + +0.3 32,293 - -0.4 32,556 + RR42_RS20970 0.29 +0.0 32,676 + RR42_RS20970 0.38 -0.0 32,776 + RR42_RS20970 0.46 +0.2 32,826 + RR42_RS20970 0.50 -1.3 32,826 + RR42_RS20970 0.50 -0.6 32,827 - RR42_RS20970 0.50 -1.2 32,827 - RR42_RS20970 0.50 -0.3 32,827 - RR42_RS20970 0.50 +1.5 32,871 + RR42_RS20970 0.53 -0.9 32,872 - RR42_RS20970 0.53 -1.2 33,000 + RR42_RS20970 0.63 -0.2 33,122 - RR42_RS20970 0.73 +2.7 33,122 - RR42_RS20970 0.73 -1.0 33,147 + RR42_RS20970 0.75 -0.8 33,147 + RR42_RS20970 0.75 +0.2 33,147 + RR42_RS20970 0.75 -0.4 33,148 - RR42_RS20970 0.75 -1.0 33,628 + RR42_RS20975 0.20 -0.2 33,629 - RR42_RS20975 0.20 +0.4 33,687 + RR42_RS20975 0.27 +0.6 33,688 - RR42_RS20975 0.27 +0.5 34,151 + RR42_RS20975 0.84 -0.3 34,151 + RR42_RS20975 0.84 +1.7 34,166 + RR42_RS20975 0.86 +0.2 34,166 + RR42_RS20975 0.86 -0.5 34,167 - RR42_RS20975 0.86 -1.1 34,299 - +1.5
Or see this region's nucleotide sequence