Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS18860

Experiment: R2A with copper (II) chloride 0.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS18850 and RR42_RS18855 are separated by 130 nucleotidesRR42_RS18855 and RR42_RS18860 are separated by 151 nucleotidesRR42_RS18860 and RR42_RS18865 are separated by 163 nucleotidesRR42_RS18865 and RR42_RS18870 are separated by 71 nucleotides RR42_RS18850: RR42_RS18850 - preprotein translocase subunit TatC, at 4,087,372 to 4,088,169 _RS18850 RR42_RS18855: RR42_RS18855 - preprotein translocase, at 4,088,300 to 4,088,809 _RS18855 RR42_RS18860: RR42_RS18860 - protein translocase TatA, at 4,088,961 to 4,089,197 _RS18860 RR42_RS18865: RR42_RS18865 - hydrolase, at 4,089,361 to 4,089,717 _RS18865 RR42_RS18870: RR42_RS18870 - membrane protein, at 4,089,789 to 4,090,163 _RS18870 Position (kb) 4088 4089 4090Strain fitness (log2 ratio) -2 -1 0 1 2at 4088.219 kb on + strandat 4088.220 kb on - strandat 4088.220 kb on - strandat 4088.220 kb on - strandat 4088.381 kb on + strand, within RR42_RS18855at 4088.381 kb on + strand, within RR42_RS18855at 4088.382 kb on - strand, within RR42_RS18855at 4088.400 kb on + strand, within RR42_RS18855at 4088.683 kb on + strand, within RR42_RS18855at 4088.683 kb on + strand, within RR42_RS18855at 4088.684 kb on - strand, within RR42_RS18855at 4088.684 kb on - strand, within RR42_RS18855at 4088.963 kb on - strandat 4088.963 kb on - strandat 4089.363 kb on - strandat 4089.423 kb on - strand, within RR42_RS18865at 4089.423 kb on - strand, within RR42_RS18865at 4089.423 kb on - strand, within RR42_RS18865at 4089.423 kb on - strand, within RR42_RS18865at 4089.423 kb on - strand, within RR42_RS18865at 4089.522 kb on + strand, within RR42_RS18865at 4089.522 kb on + strand, within RR42_RS18865at 4089.523 kb on - strand, within RR42_RS18865at 4089.619 kb on - strand, within RR42_RS18865at 4089.619 kb on - strand, within RR42_RS18865at 4089.619 kb on - strand, within RR42_RS18865at 4089.650 kb on + strand, within RR42_RS18865at 4089.650 kb on + strand, within RR42_RS18865at 4089.650 kb on + strand, within RR42_RS18865at 4089.650 kb on + strand, within RR42_RS18865at 4089.651 kb on - strand, within RR42_RS18865at 4089.651 kb on - strand, within RR42_RS18865at 4089.651 kb on - strand, within RR42_RS18865at 4089.651 kb on - strand, within RR42_RS18865at 4089.809 kb on - strandat 4089.809 kb on - strandat 4089.832 kb on + strand, within RR42_RS18870at 4089.832 kb on + strand, within RR42_RS18870at 4089.833 kb on - strand, within RR42_RS18870at 4089.833 kb on - strand, within RR42_RS18870at 4089.833 kb on - strand, within RR42_RS18870at 4089.833 kb on - strand, within RR42_RS18870at 4089.851 kb on + strand, within RR42_RS18870at 4089.856 kb on + strand, within RR42_RS18870at 4089.856 kb on + strand, within RR42_RS18870at 4089.856 kb on + strand, within RR42_RS18870at 4089.856 kb on + strandat 4089.856 kb on + strand, within RR42_RS18870at 4089.856 kb on + strand, within RR42_RS18870at 4089.857 kb on - strand, within RR42_RS18870at 4089.857 kb on - strand, within RR42_RS18870at 4089.857 kb on - strand, within RR42_RS18870at 4089.997 kb on + strand, within RR42_RS18870at 4089.997 kb on + strand, within RR42_RS18870at 4089.997 kb on + strand, within RR42_RS18870at 4089.997 kb on + strand, within RR42_RS18870at 4089.998 kb on - strand, within RR42_RS18870at 4089.998 kb on - strand, within RR42_RS18870at 4089.998 kb on - strand, within RR42_RS18870at 4089.998 kb on - strand, within RR42_RS18870at 4089.998 kb on - strand, within RR42_RS18870at 4089.998 kb on - strand, within RR42_RS18870at 4089.998 kb on - strand, within RR42_RS18870at 4090.031 kb on - strand, within RR42_RS18870at 4090.031 kb on - strand, within RR42_RS18870at 4090.087 kb on + strand, within RR42_RS18870at 4090.087 kb on + strand, within RR42_RS18870at 4090.087 kb on + strand, within RR42_RS18870at 4090.097 kb on - strand, within RR42_RS18870at 4090.189 kb on + strandat 4090.189 kb on + strandat 4090.190 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with copper (II) chloride 0.25 mM
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4,088,219 + -0.8
4,088,220 - -0.7
4,088,220 - -0.3
4,088,220 - +0.2
4,088,381 + RR42_RS18855 0.16 -2.6
4,088,381 + RR42_RS18855 0.16 -2.5
4,088,382 - RR42_RS18855 0.16 -0.6
4,088,400 + RR42_RS18855 0.20 +1.4
4,088,683 + RR42_RS18855 0.75 -2.7
4,088,683 + RR42_RS18855 0.75 +0.0
4,088,684 - RR42_RS18855 0.75 -1.9
4,088,684 - RR42_RS18855 0.75 +0.8
4,088,963 - -0.2
4,088,963 - +1.4
4,089,363 - +1.4
4,089,423 - RR42_RS18865 0.17 -0.4
4,089,423 - RR42_RS18865 0.17 -1.6
4,089,423 - RR42_RS18865 0.17 -0.5
4,089,423 - RR42_RS18865 0.17 -0.4
4,089,423 - RR42_RS18865 0.17 -0.2
4,089,522 + RR42_RS18865 0.45 +2.0
4,089,522 + RR42_RS18865 0.45 +0.0
4,089,523 - RR42_RS18865 0.45 +0.4
4,089,619 - RR42_RS18865 0.72 +0.3
4,089,619 - RR42_RS18865 0.72 +0.4
4,089,619 - RR42_RS18865 0.72 -1.0
4,089,650 + RR42_RS18865 0.81 -0.6
4,089,650 + RR42_RS18865 0.81 -2.1
4,089,650 + RR42_RS18865 0.81 +0.6
4,089,650 + RR42_RS18865 0.81 -0.4
4,089,651 - RR42_RS18865 0.81 +0.6
4,089,651 - RR42_RS18865 0.81 -2.2
4,089,651 - RR42_RS18865 0.81 -0.4
4,089,651 - RR42_RS18865 0.81 -0.2
4,089,809 - -0.4
4,089,809 - +0.8
4,089,832 + RR42_RS18870 0.11 +1.0
4,089,832 + RR42_RS18870 0.11 +0.6
4,089,833 - RR42_RS18870 0.12 +0.7
4,089,833 - RR42_RS18870 0.12 -0.6
4,089,833 - RR42_RS18870 0.12 +0.2
4,089,833 - RR42_RS18870 0.12 -1.3
4,089,851 + RR42_RS18870 0.17 +0.0
4,089,856 + RR42_RS18870 0.18 +1.0
4,089,856 + RR42_RS18870 0.18 +0.3
4,089,856 + RR42_RS18870 0.18 -0.3
4,089,856 + +0.4
4,089,856 + RR42_RS18870 0.18 -0.2
4,089,856 + RR42_RS18870 0.18 +0.7
4,089,857 - RR42_RS18870 0.18 +0.1
4,089,857 - RR42_RS18870 0.18 -1.3
4,089,857 - RR42_RS18870 0.18 -0.2
4,089,997 + RR42_RS18870 0.55 +0.7
4,089,997 + RR42_RS18870 0.55 -0.7
4,089,997 + RR42_RS18870 0.55 -0.4
4,089,997 + RR42_RS18870 0.55 +2.0
4,089,998 - RR42_RS18870 0.56 +0.1
4,089,998 - RR42_RS18870 0.56 -0.3
4,089,998 - RR42_RS18870 0.56 +0.7
4,089,998 - RR42_RS18870 0.56 +1.4
4,089,998 - RR42_RS18870 0.56 -0.4
4,089,998 - RR42_RS18870 0.56 +0.5
4,089,998 - RR42_RS18870 0.56 +0.2
4,090,031 - RR42_RS18870 0.65 +0.9
4,090,031 - RR42_RS18870 0.65 -1.3
4,090,087 + RR42_RS18870 0.79 +0.6
4,090,087 + RR42_RS18870 0.79 -1.6
4,090,087 + RR42_RS18870 0.79 +0.8
4,090,097 - RR42_RS18870 0.82 +0.5
4,090,189 + +1.7
4,090,189 + -0.2
4,090,190 - +0.5

Or see this region's nucleotide sequence