Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS11850

Experiment: R2A with copper (II) chloride 0.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS11845 and RR42_RS11850 are separated by 11 nucleotidesRR42_RS11850 and RR42_RS11855 are separated by 37 nucleotidesRR42_RS11855 and RR42_RS11860 are separated by 53 nucleotides RR42_RS11845: RR42_RS11845 - 1-deoxy-D-xylulose 5-phosphate reductoisomerase, at 2,533,165 to 2,534,343 _RS11845 RR42_RS11850: RR42_RS11850 - phosphatidate cytidylyltransferase, at 2,534,355 to 2,535,176 _RS11850 RR42_RS11855: RR42_RS11855 - UDP diphosphate synthase, at 2,535,214 to 2,535,987 _RS11855 RR42_RS11860: RR42_RS11860 - ribosome recycling factor, at 2,536,041 to 2,536,601 _RS11860 Position (kb) 2534 2535 2536Strain fitness (log2 ratio) -1 0 1at 2534.363 kb on - strandat 2534.363 kb on - strandat 2534.363 kb on - strandat 2534.363 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with copper (II) chloride 0.25 mM
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2,534,363 - -0.8
2,534,363 - +1.4
2,534,363 - +0.3
2,534,363 - +0.6

Or see this region's nucleotide sequence