Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS08985

Experiment: R2A with copper (II) chloride 0.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS08975 and RR42_RS08980 are separated by 467 nucleotidesRR42_RS08980 and RR42_RS08985 are separated by 272 nucleotidesRR42_RS08985 and RR42_RS08990 are separated by 188 nucleotides RR42_RS08975: RR42_RS08975 - hypothetical protein, at 1,884,940 to 1,885,461 _RS08975 RR42_RS08980: RR42_RS08980 - hypothetical protein, at 1,885,929 to 1,886,144 _RS08980 RR42_RS08985: RR42_RS08985 - diguanylate cyclase, at 1,886,417 to 1,888,045 _RS08985 RR42_RS08990: RR42_RS08990 - DNA polymerase, at 1,888,234 to 1,889,397 _RS08990 Position (kb) 1886 1887 1888 1889Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1885.453 kb on + strandat 1885.454 kb on - strandat 1885.619 kb on + strandat 1885.763 kb on + strandat 1885.763 kb on + strandat 1885.872 kb on + strandat 1886.009 kb on + strand, within RR42_RS08980at 1886.026 kb on - strand, within RR42_RS08980at 1886.038 kb on + strand, within RR42_RS08980at 1886.038 kb on + strand, within RR42_RS08980at 1886.078 kb on + strand, within RR42_RS08980at 1886.078 kb on + strand, within RR42_RS08980at 1886.139 kb on - strandat 1886.166 kb on - strandat 1886.280 kb on + strandat 1886.281 kb on - strandat 1886.293 kb on - strandat 1886.489 kb on + strandat 1886.597 kb on + strand, within RR42_RS08985at 1886.597 kb on + strand, within RR42_RS08985at 1886.960 kb on - strand, within RR42_RS08985at 1886.960 kb on - strand, within RR42_RS08985at 1886.972 kb on + strand, within RR42_RS08985at 1886.972 kb on + strand, within RR42_RS08985at 1887.054 kb on + strand, within RR42_RS08985at 1887.055 kb on - strand, within RR42_RS08985at 1887.186 kb on + strand, within RR42_RS08985at 1887.187 kb on - strand, within RR42_RS08985at 1887.213 kb on + strand, within RR42_RS08985at 1887.214 kb on - strand, within RR42_RS08985at 1887.258 kb on - strand, within RR42_RS08985at 1887.424 kb on + strand, within RR42_RS08985at 1887.424 kb on + strand, within RR42_RS08985at 1887.425 kb on - strand, within RR42_RS08985at 1887.425 kb on - strand, within RR42_RS08985at 1887.425 kb on - strand, within RR42_RS08985at 1887.426 kb on + strand, within RR42_RS08985at 1887.426 kb on + strand, within RR42_RS08985at 1887.497 kb on + strand, within RR42_RS08985at 1887.497 kb on + strand, within RR42_RS08985at 1887.497 kb on + strand, within RR42_RS08985at 1887.497 kb on + strand, within RR42_RS08985at 1887.497 kb on + strand, within RR42_RS08985at 1887.497 kb on + strand, within RR42_RS08985at 1887.498 kb on - strand, within RR42_RS08985at 1887.498 kb on - strand, within RR42_RS08985at 1887.498 kb on - strand, within RR42_RS08985at 1887.498 kb on - strand, within RR42_RS08985at 1887.498 kb on - strand, within RR42_RS08985at 1887.514 kb on - strand, within RR42_RS08985at 1887.543 kb on + strand, within RR42_RS08985at 1887.543 kb on + strand, within RR42_RS08985at 1887.543 kb on + strand, within RR42_RS08985at 1887.543 kb on + strand, within RR42_RS08985at 1887.543 kb on + strand, within RR42_RS08985at 1887.543 kb on + strand, within RR42_RS08985at 1887.543 kb on + strand, within RR42_RS08985at 1887.543 kb on + strand, within RR42_RS08985at 1887.543 kb on + strand, within RR42_RS08985at 1887.544 kb on - strand, within RR42_RS08985at 1887.544 kb on - strand, within RR42_RS08985at 1887.544 kb on - strand, within RR42_RS08985at 1887.544 kb on - strand, within RR42_RS08985at 1887.544 kb on - strand, within RR42_RS08985at 1887.547 kb on + strand, within RR42_RS08985at 1887.547 kb on + strand, within RR42_RS08985at 1887.548 kb on - strand, within RR42_RS08985at 1887.548 kb on - strand, within RR42_RS08985at 1887.548 kb on - strand, within RR42_RS08985at 1887.548 kb on - strand, within RR42_RS08985at 1887.548 kb on - strand, within RR42_RS08985at 1887.548 kb on - strand, within RR42_RS08985at 1887.612 kb on + strand, within RR42_RS08985at 1887.613 kb on - strand, within RR42_RS08985at 1887.613 kb on - strand, within RR42_RS08985at 1887.613 kb on - strand, within RR42_RS08985at 1887.961 kb on + strandat 1887.961 kb on + strandat 1887.961 kb on + strandat 1887.961 kb on + strandat 1887.962 kb on - strandat 1887.962 kb on - strandat 1888.031 kb on + strandat 1888.031 kb on + strandat 1888.049 kb on + strandat 1888.057 kb on + strandat 1888.057 kb on + strandat 1888.057 kb on + strandat 1888.057 kb on + strandat 1888.058 kb on - strandat 1888.058 kb on - strandat 1888.058 kb on - strandat 1888.082 kb on - strandat 1888.096 kb on + strandat 1888.183 kb on - strandat 1888.201 kb on - strandat 1888.201 kb on - strandat 1888.203 kb on + strandat 1888.203 kb on + strandat 1888.203 kb on + strandat 1888.203 kb on + strandat 1888.204 kb on - strandat 1888.204 kb on - strandat 1888.204 kb on - strandat 1888.235 kb on + strandat 1888.454 kb on + strand, within RR42_RS08990at 1888.487 kb on + strand, within RR42_RS08990at 1888.487 kb on + strand, within RR42_RS08990at 1888.679 kb on + strand, within RR42_RS08990at 1888.798 kb on - strand, within RR42_RS08990at 1888.798 kb on - strand, within RR42_RS08990at 1888.798 kb on - strand, within RR42_RS08990at 1889.009 kb on + strand, within RR42_RS08990at 1889.010 kb on - strand, within RR42_RS08990

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with copper (II) chloride 0.25 mM
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1,885,453 + +1.2
1,885,454 - +0.1
1,885,619 + -0.5
1,885,763 + +0.8
1,885,763 + +0.5
1,885,872 + +0.2
1,886,009 + RR42_RS08980 0.37 +0.4
1,886,026 - RR42_RS08980 0.45 +0.5
1,886,038 + RR42_RS08980 0.50 -0.9
1,886,038 + RR42_RS08980 0.50 +0.8
1,886,078 + RR42_RS08980 0.69 +0.8
1,886,078 + RR42_RS08980 0.69 +0.9
1,886,139 - -0.5
1,886,166 - -1.5
1,886,280 + -0.1
1,886,281 - -0.7
1,886,293 - -1.0
1,886,489 + +0.0
1,886,597 + RR42_RS08985 0.11 -0.8
1,886,597 + RR42_RS08985 0.11 -0.3
1,886,960 - RR42_RS08985 0.33 -1.2
1,886,960 - RR42_RS08985 0.33 -0.2
1,886,972 + RR42_RS08985 0.34 +0.2
1,886,972 + RR42_RS08985 0.34 -0.8
1,887,054 + RR42_RS08985 0.39 -0.3
1,887,055 - RR42_RS08985 0.39 +0.1
1,887,186 + RR42_RS08985 0.47 +3.4
1,887,187 - RR42_RS08985 0.47 -0.2
1,887,213 + RR42_RS08985 0.49 +0.0
1,887,214 - RR42_RS08985 0.49 -0.2
1,887,258 - RR42_RS08985 0.52 +0.4
1,887,424 + RR42_RS08985 0.62 +0.7
1,887,424 + RR42_RS08985 0.62 -0.4
1,887,425 - RR42_RS08985 0.62 -1.7
1,887,425 - RR42_RS08985 0.62 +0.4
1,887,425 - RR42_RS08985 0.62 -0.2
1,887,426 + RR42_RS08985 0.62 -0.6
1,887,426 + RR42_RS08985 0.62 +1.1
1,887,497 + RR42_RS08985 0.66 -1.3
1,887,497 + RR42_RS08985 0.66 -1.2
1,887,497 + RR42_RS08985 0.66 -0.8
1,887,497 + RR42_RS08985 0.66 -0.0
1,887,497 + RR42_RS08985 0.66 +0.1
1,887,497 + RR42_RS08985 0.66 -0.3
1,887,498 - RR42_RS08985 0.66 +0.8
1,887,498 - RR42_RS08985 0.66 -0.4
1,887,498 - RR42_RS08985 0.66 +2.8
1,887,498 - RR42_RS08985 0.66 +0.4
1,887,498 - RR42_RS08985 0.66 +0.1
1,887,514 - RR42_RS08985 0.67 +0.5
1,887,543 + RR42_RS08985 0.69 +0.5
1,887,543 + RR42_RS08985 0.69 -0.3
1,887,543 + RR42_RS08985 0.69 +0.8
1,887,543 + RR42_RS08985 0.69 +0.8
1,887,543 + RR42_RS08985 0.69 -0.3
1,887,543 + RR42_RS08985 0.69 -0.7
1,887,543 + RR42_RS08985 0.69 -1.5
1,887,543 + RR42_RS08985 0.69 -1.0
1,887,543 + RR42_RS08985 0.69 -0.2
1,887,544 - RR42_RS08985 0.69 +0.5
1,887,544 - RR42_RS08985 0.69 +0.3
1,887,544 - RR42_RS08985 0.69 +0.2
1,887,544 - RR42_RS08985 0.69 +0.8
1,887,544 - RR42_RS08985 0.69 +0.8
1,887,547 + RR42_RS08985 0.69 +0.9
1,887,547 + RR42_RS08985 0.69 -0.5
1,887,548 - RR42_RS08985 0.69 -0.9
1,887,548 - RR42_RS08985 0.69 +0.4
1,887,548 - RR42_RS08985 0.69 -0.3
1,887,548 - RR42_RS08985 0.69 -0.5
1,887,548 - RR42_RS08985 0.69 +0.8
1,887,548 - RR42_RS08985 0.69 -0.8
1,887,612 + RR42_RS08985 0.73 +3.4
1,887,613 - RR42_RS08985 0.73 +1.5
1,887,613 - RR42_RS08985 0.73 +1.3
1,887,613 - RR42_RS08985 0.73 +0.2
1,887,961 + +0.9
1,887,961 + -0.2
1,887,961 + -0.4
1,887,961 + -0.4
1,887,962 - -0.4
1,887,962 - -1.1
1,888,031 + +1.5
1,888,031 + -0.7
1,888,049 + -2.8
1,888,057 + -0.2
1,888,057 + +0.8
1,888,057 + +1.8
1,888,057 + +0.7
1,888,058 - -0.8
1,888,058 - +0.1
1,888,058 - +1.1
1,888,082 - +1.8
1,888,096 + +0.6
1,888,183 - -0.0
1,888,201 - +0.7
1,888,201 - -0.3
1,888,203 + -0.7
1,888,203 + -0.1
1,888,203 + +0.2
1,888,203 + +0.4
1,888,204 - -0.0
1,888,204 - -1.0
1,888,204 - -0.6
1,888,235 + +0.4
1,888,454 + RR42_RS08990 0.19 -0.2
1,888,487 + RR42_RS08990 0.22 -0.3
1,888,487 + RR42_RS08990 0.22 +0.8
1,888,679 + RR42_RS08990 0.38 -0.0
1,888,798 - RR42_RS08990 0.48 -1.3
1,888,798 - RR42_RS08990 0.48 -0.7
1,888,798 - RR42_RS08990 0.48 -1.0
1,889,009 + RR42_RS08990 0.67 +0.2
1,889,010 - RR42_RS08990 0.67 -0.9

Or see this region's nucleotide sequence