Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS08025

Experiment: R2A with copper (II) chloride 0.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS08015 and RR42_RS08020 overlap by 2 nucleotidesRR42_RS08020 and RR42_RS08025 are separated by 32 nucleotidesRR42_RS08025 and RR42_RS08030 are separated by 35 nucleotidesRR42_RS08030 and RR42_RS08035 are separated by 2 nucleotides RR42_RS08015: RR42_RS08015 - hypothetical protein, at 1,719,637 to 1,720,380 _RS08015 RR42_RS08020: RR42_RS08020 - hypothetical protein, at 1,720,379 to 1,720,918 _RS08020 RR42_RS08025: RR42_RS08025 - phage Gp37Gp68, at 1,720,951 to 1,721,838 _RS08025 RR42_RS08030: RR42_RS08030 - hypothetical protein, at 1,721,874 to 1,722,170 _RS08030 RR42_RS08035: RR42_RS08035 - DNA methyltransferase, at 1,722,173 to 1,723,957 _RS08035 Position (kb) 1720 1721 1722Strain fitness (log2 ratio) -2 -1 0 1 2at 1720.004 kb on + strand, within RR42_RS08015at 1720.154 kb on + strand, within RR42_RS08015at 1720.154 kb on + strand, within RR42_RS08015at 1720.154 kb on + strand, within RR42_RS08015at 1720.154 kb on + strand, within RR42_RS08015at 1720.278 kb on + strand, within RR42_RS08015at 1720.279 kb on - strand, within RR42_RS08015at 1720.279 kb on - strand, within RR42_RS08015at 1720.342 kb on + strandat 1720.342 kb on + strandat 1720.342 kb on + strandat 1720.383 kb on - strandat 1720.621 kb on + strand, within RR42_RS08020at 1720.625 kb on + strand, within RR42_RS08020at 1720.770 kb on + strand, within RR42_RS08020at 1720.801 kb on + strand, within RR42_RS08020at 1720.801 kb on + strand, within RR42_RS08020at 1720.809 kb on + strand, within RR42_RS08020at 1720.809 kb on + strand, within RR42_RS08020at 1720.809 kb on + strand, within RR42_RS08020at 1721.399 kb on + strand, within RR42_RS08025at 1721.616 kb on + strand, within RR42_RS08025at 1721.971 kb on + strand, within RR42_RS08030at 1722.105 kb on + strand, within RR42_RS08030at 1722.256 kb on + strandat 1722.256 kb on + strandat 1722.384 kb on + strand, within RR42_RS08035

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with copper (II) chloride 0.25 mM
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1,720,004 + RR42_RS08015 0.49 +1.6
1,720,154 + RR42_RS08015 0.69 -0.4
1,720,154 + RR42_RS08015 0.69 +0.4
1,720,154 + RR42_RS08015 0.69 +0.8
1,720,154 + RR42_RS08015 0.69 -0.6
1,720,278 + RR42_RS08015 0.86 -1.6
1,720,279 - RR42_RS08015 0.86 +0.9
1,720,279 - RR42_RS08015 0.86 -0.5
1,720,342 + +0.2
1,720,342 + -1.2
1,720,342 + -0.0
1,720,383 - +0.1
1,720,621 + RR42_RS08020 0.45 -0.5
1,720,625 + RR42_RS08020 0.46 -0.5
1,720,770 + RR42_RS08020 0.72 -0.4
1,720,801 + RR42_RS08020 0.78 -0.1
1,720,801 + RR42_RS08020 0.78 +0.2
1,720,809 + RR42_RS08020 0.80 -0.1
1,720,809 + RR42_RS08020 0.80 +0.2
1,720,809 + RR42_RS08020 0.80 +0.5
1,721,399 + RR42_RS08025 0.50 +1.9
1,721,616 + RR42_RS08025 0.75 -1.8
1,721,971 + RR42_RS08030 0.33 -0.7
1,722,105 + RR42_RS08030 0.78 -1.0
1,722,256 + +0.4
1,722,256 + +0.4
1,722,384 + RR42_RS08035 0.12 +0.5

Or see this region's nucleotide sequence