Experiment: R2A with copper (II) chloride 0.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS04040 and RR42_RS04045 are separated by 122 nucleotides RR42_RS04045 and RR42_RS04050 are separated by 48 nucleotides
RR42_RS04040: RR42_RS04040 - hypothetical protein, at 896,239 to 896,526
_RS04040
RR42_RS04045: RR42_RS04045 - proline hydroxylase, at 896,649 to 897,257
_RS04045
RR42_RS04050: RR42_RS04050 - Crp/Fnr family transcriptional regulator, at 897,306 to 898,028
_RS04050
Position (kb) 896
897 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 895.273 kb on + strand at 895.276 kb on - strand at 895.276 kb on - strand at 895.552 kb on - strand at 895.828 kb on + strand at 895.828 kb on + strand at 895.828 kb on + strand at 895.842 kb on - strand at 895.871 kb on - strand at 895.894 kb on + strand at 895.895 kb on - strand at 895.936 kb on - strand at 895.936 kb on - strand at 896.070 kb on + strand at 896.070 kb on + strand at 896.070 kb on + strand at 896.071 kb on - strand at 896.071 kb on - strand at 896.080 kb on + strand at 896.080 kb on + strand at 896.080 kb on + strand at 896.139 kb on - strand at 896.139 kb on - strand at 896.139 kb on - strand at 896.196 kb on + strand at 896.196 kb on + strand at 896.196 kb on + strand at 896.197 kb on - strand at 896.197 kb on - strand at 896.197 kb on - strand at 896.198 kb on + strand at 896.198 kb on + strand at 896.198 kb on + strand at 896.202 kb on + strand at 896.202 kb on + strand at 896.203 kb on - strand at 896.203 kb on - strand at 896.203 kb on - strand at 896.203 kb on - strand at 896.203 kb on - strand at 896.203 kb on - strand at 896.269 kb on + strand, within RR42_RS04040 at 896.270 kb on - strand, within RR42_RS04040 at 896.459 kb on - strand, within RR42_RS04040 at 896.459 kb on - strand, within RR42_RS04040 at 896.459 kb on - strand, within RR42_RS04040 at 896.459 kb on - strand, within RR42_RS04040 at 896.500 kb on + strand at 896.501 kb on - strand at 896.561 kb on + strand at 896.561 kb on + strand at 896.561 kb on + strand at 896.995 kb on - strand, within RR42_RS04045 at 896.995 kb on - strand, within RR42_RS04045 at 897.196 kb on + strand, within RR42_RS04045 at 897.196 kb on + strand, within RR42_RS04045 at 897.197 kb on - strand at 897.282 kb on + strand at 897.433 kb on - strand, within RR42_RS04050
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with copper (II) chloride 0.25 mM remove 895,273 + +1.7 895,276 - +0.6 895,276 - +0.5 895,552 - +0.6 895,828 + -1.4 895,828 + -0.2 895,828 + -0.1 895,842 - -1.4 895,871 - -1.6 895,894 + -0.5 895,895 - -0.4 895,936 - -1.1 895,936 - -1.4 896,070 + -0.4 896,070 + -0.2 896,070 + +0.2 896,071 - +0.2 896,071 - -0.3 896,080 + -0.0 896,080 + +0.1 896,080 + -1.2 896,139 - +1.1 896,139 - +0.3 896,139 - +0.3 896,196 + -0.3 896,196 + -1.5 896,196 + -0.2 896,197 - +1.9 896,197 - +1.1 896,197 - +0.7 896,198 + -2.1 896,198 + -1.5 896,198 + +0.1 896,202 + -0.0 896,202 + +2.4 896,203 - +0.4 896,203 - +0.4 896,203 - +0.0 896,203 - -0.8 896,203 - +1.1 896,203 - -1.4 896,269 + RR42_RS04040 0.10 -0.3 896,270 - RR42_RS04040 0.11 +0.5 896,459 - RR42_RS04040 0.76 -0.8 896,459 - RR42_RS04040 0.76 +0.0 896,459 - RR42_RS04040 0.76 +0.9 896,459 - RR42_RS04040 0.76 -0.9 896,500 + +0.1 896,501 - +0.7 896,561 + -0.2 896,561 + -0.9 896,561 + +1.2 896,995 - RR42_RS04045 0.57 +5.7 896,995 - RR42_RS04045 0.57 +0.5 897,196 + RR42_RS04045 0.90 -0.1 897,196 + RR42_RS04045 0.90 -0.4 897,197 - -0.0 897,282 + -0.4 897,433 - RR42_RS04050 0.18 +0.4
Or see this region's nucleotide sequence