Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS00330

Experiment: R2A with copper (II) chloride 0.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS00325 and RR42_RS00330 are separated by 78 nucleotidesRR42_RS00330 and RR42_RS00335 are separated by 95 nucleotidesRR42_RS00335 and RR42_RS00340 are separated by 21 nucleotides RR42_RS00325: RR42_RS00325 - MFS transporter, at 90,910 to 92,400 _RS00325 RR42_RS00330: RR42_RS00330 - glutathione peroxidase, at 92,479 to 93,117 _RS00330 RR42_RS00335: RR42_RS00335 - MBL fold metallo-hydrolase, at 93,213 to 94,004 _RS00335 RR42_RS00340: RR42_RS00340 - glutathione S-transferase, at 94,026 to 94,652 _RS00340 Position (kb) 92 93 94Strain fitness (log2 ratio) -2 -1 0 1 2at 91.549 kb on + strand, within RR42_RS00325at 91.549 kb on + strand, within RR42_RS00325at 91.549 kb on + strand, within RR42_RS00325at 91.549 kb on + strand, within RR42_RS00325at 91.549 kb on + strand, within RR42_RS00325at 91.549 kb on + strand, within RR42_RS00325at 91.549 kb on + strand, within RR42_RS00325at 91.550 kb on - strand, within RR42_RS00325at 91.550 kb on - strand, within RR42_RS00325at 91.678 kb on + strand, within RR42_RS00325at 91.678 kb on + strand, within RR42_RS00325at 91.678 kb on + strand, within RR42_RS00325at 91.678 kb on + strand, within RR42_RS00325at 91.679 kb on - strand, within RR42_RS00325at 91.679 kb on - strand, within RR42_RS00325at 91.679 kb on - strand, within RR42_RS00325at 91.719 kb on + strand, within RR42_RS00325at 91.719 kb on + strand, within RR42_RS00325at 91.720 kb on - strand, within RR42_RS00325at 92.078 kb on + strand, within RR42_RS00325at 92.078 kb on + strand, within RR42_RS00325at 92.079 kb on - strand, within RR42_RS00325at 92.425 kb on + strandat 92.426 kb on - strandat 92.426 kb on - strandat 92.449 kb on + strandat 92.449 kb on + strandat 92.730 kb on + strand, within RR42_RS00330at 92.740 kb on + strand, within RR42_RS00330at 92.740 kb on + strand, within RR42_RS00330at 92.740 kb on + strand, within RR42_RS00330at 92.740 kb on + strand, within RR42_RS00330at 92.741 kb on - strand, within RR42_RS00330at 92.741 kb on - strand, within RR42_RS00330at 92.761 kb on + strand, within RR42_RS00330at 92.761 kb on + strand, within RR42_RS00330at 92.762 kb on - strandat 92.783 kb on - strand, within RR42_RS00330at 92.791 kb on + strand, within RR42_RS00330at 92.792 kb on - strand, within RR42_RS00330at 92.792 kb on - strand, within RR42_RS00330at 92.881 kb on + strand, within RR42_RS00330at 92.881 kb on + strand, within RR42_RS00330at 92.882 kb on - strand, within RR42_RS00330at 92.890 kb on + strand, within RR42_RS00330at 92.890 kb on + strand, within RR42_RS00330at 92.890 kb on + strand, within RR42_RS00330at 92.890 kb on + strand, within RR42_RS00330at 92.891 kb on - strand, within RR42_RS00330at 92.891 kb on - strand, within RR42_RS00330at 92.891 kb on - strand, within RR42_RS00330at 92.953 kb on + strand, within RR42_RS00330at 92.953 kb on + strand, within RR42_RS00330at 92.953 kb on + strand, within RR42_RS00330at 92.953 kb on + strand, within RR42_RS00330at 92.953 kb on + strand, within RR42_RS00330at 92.953 kb on + strand, within RR42_RS00330at 92.954 kb on - strand, within RR42_RS00330at 92.954 kb on - strand, within RR42_RS00330at 92.954 kb on - strand, within RR42_RS00330at 93.001 kb on + strand, within RR42_RS00330at 93.007 kb on + strand, within RR42_RS00330at 93.007 kb on + strand, within RR42_RS00330at 93.007 kb on + strand, within RR42_RS00330at 93.007 kb on + strand, within RR42_RS00330at 93.007 kb on + strand, within RR42_RS00330at 93.007 kb on + strand, within RR42_RS00330at 93.007 kb on + strand, within RR42_RS00330at 93.007 kb on + strand, within RR42_RS00330at 93.008 kb on - strand, within RR42_RS00330at 93.008 kb on - strand, within RR42_RS00330at 93.008 kb on - strand, within RR42_RS00330at 93.008 kb on - strand, within RR42_RS00330at 93.008 kb on - strand, within RR42_RS00330at 93.043 kb on + strand, within RR42_RS00330at 93.043 kb on + strand, within RR42_RS00330at 93.043 kb on + strand, within RR42_RS00330at 93.043 kb on + strand, within RR42_RS00330at 93.044 kb on - strand, within RR42_RS00330at 93.044 kb on - strand, within RR42_RS00330at 93.044 kb on - strand, within RR42_RS00330at 93.046 kb on - strand, within RR42_RS00330at 93.046 kb on - strand, within RR42_RS00330at 93.116 kb on - strandat 93.183 kb on + strandat 93.184 kb on - strandat 93.226 kb on + strandat 93.226 kb on + strandat 93.228 kb on + strandat 93.229 kb on - strandat 93.229 kb on - strandat 93.366 kb on + strand, within RR42_RS00335at 93.367 kb on - strand, within RR42_RS00335at 93.367 kb on - strand, within RR42_RS00335at 93.378 kb on + strand, within RR42_RS00335at 93.378 kb on + strand, within RR42_RS00335at 93.378 kb on + strand, within RR42_RS00335at 93.378 kb on + strand, within RR42_RS00335at 93.379 kb on - strand, within RR42_RS00335at 93.379 kb on - strand, within RR42_RS00335at 93.379 kb on - strand, within RR42_RS00335at 93.396 kb on + strand, within RR42_RS00335at 93.420 kb on + strand, within RR42_RS00335at 93.420 kb on + strand, within RR42_RS00335at 93.420 kb on + strand, within RR42_RS00335at 93.420 kb on + strand, within RR42_RS00335at 93.420 kb on + strand, within RR42_RS00335at 93.421 kb on - strand, within RR42_RS00335at 93.421 kb on - strand, within RR42_RS00335at 93.421 kb on - strand, within RR42_RS00335at 93.421 kb on - strand, within RR42_RS00335at 93.421 kb on - strand, within RR42_RS00335at 93.450 kb on - strand, within RR42_RS00335at 93.569 kb on + strand, within RR42_RS00335at 93.570 kb on - strand, within RR42_RS00335at 93.666 kb on + strand, within RR42_RS00335at 93.666 kb on + strand, within RR42_RS00335at 93.666 kb on + strand, within RR42_RS00335at 93.666 kb on + strand, within RR42_RS00335at 93.667 kb on - strand, within RR42_RS00335at 93.795 kb on + strand, within RR42_RS00335at 93.795 kb on + strand, within RR42_RS00335at 93.796 kb on - strand, within RR42_RS00335at 93.796 kb on - strand, within RR42_RS00335at 93.969 kb on + strandat 93.969 kb on + strandat 93.969 kb on + strandat 93.969 kb on + strandat 93.969 kb on + strandat 93.969 kb on + strandat 93.969 kb on + strandat 93.970 kb on - strandat 93.970 kb on - strandat 93.970 kb on - strandat 94.114 kb on + strand, within RR42_RS00340at 94.115 kb on - strand, within RR42_RS00340

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with copper (II) chloride 0.25 mM
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91,549 + RR42_RS00325 0.43 +0.2
91,549 + RR42_RS00325 0.43 +0.2
91,549 + RR42_RS00325 0.43 +0.5
91,549 + RR42_RS00325 0.43 +1.2
91,549 + RR42_RS00325 0.43 -0.2
91,549 + RR42_RS00325 0.43 +1.0
91,549 + RR42_RS00325 0.43 -0.9
91,550 - RR42_RS00325 0.43 -0.1
91,550 - RR42_RS00325 0.43 +1.2
91,678 + RR42_RS00325 0.52 -0.4
91,678 + RR42_RS00325 0.52 +0.1
91,678 + RR42_RS00325 0.52 +0.3
91,678 + RR42_RS00325 0.52 -1.2
91,679 - RR42_RS00325 0.52 +0.6
91,679 - RR42_RS00325 0.52 -0.7
91,679 - RR42_RS00325 0.52 -0.1
91,719 + RR42_RS00325 0.54 +0.8
91,719 + RR42_RS00325 0.54 -2.0
91,720 - RR42_RS00325 0.54 +0.5
92,078 + RR42_RS00325 0.78 -0.4
92,078 + RR42_RS00325 0.78 +0.6
92,079 - RR42_RS00325 0.78 -1.0
92,425 + +0.1
92,426 - -0.7
92,426 - +1.1
92,449 + +2.0
92,449 + +0.3
92,730 + RR42_RS00330 0.39 -0.9
92,740 + RR42_RS00330 0.41 -0.9
92,740 + RR42_RS00330 0.41 +0.3
92,740 + RR42_RS00330 0.41 +0.2
92,740 + RR42_RS00330 0.41 +0.7
92,741 - RR42_RS00330 0.41 -0.3
92,741 - RR42_RS00330 0.41 +0.3
92,761 + RR42_RS00330 0.44 -0.7
92,761 + RR42_RS00330 0.44 -1.1
92,762 - +1.1
92,783 - RR42_RS00330 0.48 -0.1
92,791 + RR42_RS00330 0.49 +1.5
92,792 - RR42_RS00330 0.49 -0.1
92,792 - RR42_RS00330 0.49 -1.5
92,881 + RR42_RS00330 0.63 -1.6
92,881 + RR42_RS00330 0.63 -0.5
92,882 - RR42_RS00330 0.63 +0.8
92,890 + RR42_RS00330 0.64 +0.2
92,890 + RR42_RS00330 0.64 +0.2
92,890 + RR42_RS00330 0.64 -0.2
92,890 + RR42_RS00330 0.64 -0.6
92,891 - RR42_RS00330 0.64 +0.6
92,891 - RR42_RS00330 0.64 +1.6
92,891 - RR42_RS00330 0.64 +0.1
92,953 + RR42_RS00330 0.74 -0.9
92,953 + RR42_RS00330 0.74 +0.3
92,953 + RR42_RS00330 0.74 +1.1
92,953 + RR42_RS00330 0.74 -1.1
92,953 + RR42_RS00330 0.74 -0.7
92,953 + RR42_RS00330 0.74 +0.3
92,954 - RR42_RS00330 0.74 -0.9
92,954 - RR42_RS00330 0.74 -1.3
92,954 - RR42_RS00330 0.74 +0.1
93,001 + RR42_RS00330 0.82 +0.7
93,007 + RR42_RS00330 0.83 -1.3
93,007 + RR42_RS00330 0.83 -0.7
93,007 + RR42_RS00330 0.83 +0.3
93,007 + RR42_RS00330 0.83 +0.4
93,007 + RR42_RS00330 0.83 -0.8
93,007 + RR42_RS00330 0.83 -1.8
93,007 + RR42_RS00330 0.83 -1.9
93,007 + RR42_RS00330 0.83 -1.5
93,008 - RR42_RS00330 0.83 +0.2
93,008 - RR42_RS00330 0.83 -1.6
93,008 - RR42_RS00330 0.83 +0.5
93,008 - RR42_RS00330 0.83 -0.4
93,008 - RR42_RS00330 0.83 +0.1
93,043 + RR42_RS00330 0.88 +0.5
93,043 + RR42_RS00330 0.88 -0.2
93,043 + RR42_RS00330 0.88 -0.8
93,043 + RR42_RS00330 0.88 -1.0
93,044 - RR42_RS00330 0.88 +0.9
93,044 - RR42_RS00330 0.88 +0.2
93,044 - RR42_RS00330 0.88 -1.3
93,046 - RR42_RS00330 0.89 -1.6
93,046 - RR42_RS00330 0.89 -0.0
93,116 - -0.7
93,183 + -0.6
93,184 - +0.1
93,226 + +0.7
93,226 + -0.1
93,228 + +0.4
93,229 - +0.1
93,229 - -0.7
93,366 + RR42_RS00335 0.19 +0.3
93,367 - RR42_RS00335 0.19 -0.7
93,367 - RR42_RS00335 0.19 -1.8
93,378 + RR42_RS00335 0.21 +1.9
93,378 + RR42_RS00335 0.21 +0.2
93,378 + RR42_RS00335 0.21 +0.2
93,378 + RR42_RS00335 0.21 +0.3
93,379 - RR42_RS00335 0.21 +0.4
93,379 - RR42_RS00335 0.21 -0.1
93,379 - RR42_RS00335 0.21 +0.4
93,396 + RR42_RS00335 0.23 -0.9
93,420 + RR42_RS00335 0.26 -0.5
93,420 + RR42_RS00335 0.26 -0.8
93,420 + RR42_RS00335 0.26 +1.0
93,420 + RR42_RS00335 0.26 -0.4
93,420 + RR42_RS00335 0.26 +0.1
93,421 - RR42_RS00335 0.26 -0.1
93,421 - RR42_RS00335 0.26 +1.0
93,421 - RR42_RS00335 0.26 -0.0
93,421 - RR42_RS00335 0.26 -0.0
93,421 - RR42_RS00335 0.26 +0.3
93,450 - RR42_RS00335 0.30 -0.2
93,569 + RR42_RS00335 0.45 -1.3
93,570 - RR42_RS00335 0.45 -0.5
93,666 + RR42_RS00335 0.57 -0.6
93,666 + RR42_RS00335 0.57 -0.5
93,666 + RR42_RS00335 0.57 -1.9
93,666 + RR42_RS00335 0.57 +0.3
93,667 - RR42_RS00335 0.57 -1.1
93,795 + RR42_RS00335 0.73 -0.0
93,795 + RR42_RS00335 0.73 +0.8
93,796 - RR42_RS00335 0.74 +0.2
93,796 - RR42_RS00335 0.74 +0.4
93,969 + +0.3
93,969 + +1.1
93,969 + +0.2
93,969 + -0.0
93,969 + -0.2
93,969 + -0.3
93,969 + +0.7
93,970 - +0.2
93,970 - +0.1
93,970 - +0.4
94,114 + RR42_RS00340 0.14 -0.3
94,115 - RR42_RS00340 0.14 +1.1

Or see this region's nucleotide sequence