Experiment: R2A with copper (II) chloride 0.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS00030 and RR42_RS00035 are separated by 136 nucleotides RR42_RS00035 and RR42_RS00040 are separated by 213 nucleotides RR42_RS00040 and RR42_RS00045 overlap by 4 nucleotides
RR42_RS00030: RR42_RS00030 - hypothetical protein, at 10,744 to 13,032
_RS00030
RR42_RS00035: RR42_RS00035 - hypothetical protein, at 13,169 to 13,756
_RS00035
RR42_RS00040: RR42_RS00040 - recombinase, at 13,970 to 14,593
_RS00040
RR42_RS00045: RR42_RS00045 - lactate dehydrogenase, at 14,590 to 17,382
_RS00045
Position (kb) 13
14 Strain fitness (log2 ratio) -2
-1
0
1
2 at 12.313 kb on + strand, within RR42_RS00030 at 12.346 kb on + strand, within RR42_RS00030 at 12.346 kb on + strand, within RR42_RS00030 at 12.346 kb on + strand, within RR42_RS00030 at 12.346 kb on + strand, within RR42_RS00030 at 12.347 kb on - strand, within RR42_RS00030 at 12.390 kb on + strand, within RR42_RS00030 at 12.401 kb on - strand, within RR42_RS00030 at 12.401 kb on - strand, within RR42_RS00030 at 12.450 kb on + strand, within RR42_RS00030 at 12.450 kb on + strand, within RR42_RS00030 at 12.450 kb on + strand, within RR42_RS00030 at 12.463 kb on - strand, within RR42_RS00030 at 12.512 kb on + strand, within RR42_RS00030 at 12.512 kb on + strand, within RR42_RS00030 at 12.512 kb on + strand, within RR42_RS00030 at 12.512 kb on + strand, within RR42_RS00030 at 12.513 kb on - strand, within RR42_RS00030 at 12.565 kb on + strand, within RR42_RS00030 at 12.566 kb on - strand, within RR42_RS00030 at 12.566 kb on - strand, within RR42_RS00030 at 12.681 kb on + strand, within RR42_RS00030 at 12.681 kb on + strand, within RR42_RS00030 at 12.681 kb on + strand, within RR42_RS00030 at 12.682 kb on - strand, within RR42_RS00030 at 12.688 kb on + strand, within RR42_RS00030 at 12.689 kb on - strand, within RR42_RS00030 at 12.689 kb on - strand, within RR42_RS00030 at 12.689 kb on - strand, within RR42_RS00030 at 12.740 kb on + strand, within RR42_RS00030 at 12.741 kb on - strand, within RR42_RS00030 at 12.743 kb on + strand, within RR42_RS00030 at 12.744 kb on - strand, within RR42_RS00030 at 12.744 kb on - strand, within RR42_RS00030 at 12.744 kb on - strand, within RR42_RS00030 at 12.758 kb on + strand, within RR42_RS00030 at 12.758 kb on + strand, within RR42_RS00030 at 12.759 kb on - strand, within RR42_RS00030 at 12.759 kb on - strand, within RR42_RS00030 at 12.759 kb on - strand, within RR42_RS00030 at 12.759 kb on - strand, within RR42_RS00030 at 12.766 kb on + strand, within RR42_RS00030 at 12.821 kb on + strand at 12.824 kb on + strand at 12.825 kb on - strand at 12.874 kb on + strand at 12.874 kb on + strand at 12.874 kb on + strand at 12.875 kb on - strand at 12.884 kb on + strand at 12.884 kb on + strand at 12.885 kb on - strand at 12.885 kb on - strand at 12.885 kb on - strand at 12.954 kb on + strand at 12.973 kb on + strand at 12.973 kb on + strand at 12.973 kb on + strand at 12.974 kb on - strand at 13.079 kb on + strand at 13.080 kb on - strand at 13.127 kb on + strand at 13.127 kb on + strand at 13.128 kb on - strand at 13.128 kb on - strand at 13.583 kb on + strand, within RR42_RS00035 at 13.639 kb on + strand, within RR42_RS00035 at 13.640 kb on - strand, within RR42_RS00035 at 13.684 kb on - strand, within RR42_RS00035 at 13.686 kb on + strand, within RR42_RS00035 at 13.686 kb on + strand, within RR42_RS00035 at 13.686 kb on + strand, within RR42_RS00035 at 13.687 kb on - strand, within RR42_RS00035 at 13.792 kb on - strand at 13.792 kb on - strand at 13.879 kb on - strand at 13.879 kb on - strand at 13.879 kb on - strand at 13.901 kb on + strand at 13.901 kb on + strand at 13.902 kb on - strand at 13.902 kb on - strand at 13.902 kb on - strand at 13.902 kb on - strand at 14.067 kb on - strand, within RR42_RS00040 at 14.067 kb on - strand, within RR42_RS00040 at 14.130 kb on + strand, within RR42_RS00040 at 14.131 kb on - strand, within RR42_RS00040 at 14.131 kb on - strand, within RR42_RS00040 at 14.184 kb on + strand, within RR42_RS00040 at 14.184 kb on + strand, within RR42_RS00040 at 14.184 kb on + strand, within RR42_RS00040 at 14.185 kb on - strand, within RR42_RS00040 at 14.185 kb on - strand, within RR42_RS00040 at 14.504 kb on + strand, within RR42_RS00040 at 14.505 kb on - strand, within RR42_RS00040 at 14.573 kb on + strand at 14.574 kb on - strand at 14.575 kb on + strand at 14.601 kb on - strand at 14.617 kb on - strand at 14.617 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with copper (II) chloride 0.25 mM remove 12,313 + RR42_RS00030 0.69 +0.8 12,346 + RR42_RS00030 0.70 -1.0 12,346 + RR42_RS00030 0.70 -0.5 12,346 + RR42_RS00030 0.70 +1.3 12,346 + RR42_RS00030 0.70 +0.3 12,347 - RR42_RS00030 0.70 -0.4 12,390 + RR42_RS00030 0.72 -0.3 12,401 - RR42_RS00030 0.72 +0.3 12,401 - RR42_RS00030 0.72 +1.7 12,450 + RR42_RS00030 0.75 +0.3 12,450 + RR42_RS00030 0.75 -0.9 12,450 + RR42_RS00030 0.75 -0.6 12,463 - RR42_RS00030 0.75 -0.8 12,512 + RR42_RS00030 0.77 +0.2 12,512 + RR42_RS00030 0.77 -0.9 12,512 + RR42_RS00030 0.77 -0.2 12,512 + RR42_RS00030 0.77 +0.3 12,513 - RR42_RS00030 0.77 -0.0 12,565 + RR42_RS00030 0.80 +1.0 12,566 - RR42_RS00030 0.80 +0.5 12,566 - RR42_RS00030 0.80 +1.0 12,681 + RR42_RS00030 0.85 -0.1 12,681 + RR42_RS00030 0.85 +1.3 12,681 + RR42_RS00030 0.85 -0.5 12,682 - RR42_RS00030 0.85 +0.3 12,688 + RR42_RS00030 0.85 +2.3 12,689 - RR42_RS00030 0.85 +0.0 12,689 - RR42_RS00030 0.85 -0.3 12,689 - RR42_RS00030 0.85 +0.5 12,740 + RR42_RS00030 0.87 -0.2 12,741 - RR42_RS00030 0.87 +1.1 12,743 + RR42_RS00030 0.87 +1.0 12,744 - RR42_RS00030 0.87 +0.3 12,744 - RR42_RS00030 0.87 +0.9 12,744 - RR42_RS00030 0.87 +0.1 12,758 + RR42_RS00030 0.88 -0.0 12,758 + RR42_RS00030 0.88 +0.2 12,759 - RR42_RS00030 0.88 -1.1 12,759 - RR42_RS00030 0.88 +0.0 12,759 - RR42_RS00030 0.88 +0.1 12,759 - RR42_RS00030 0.88 +2.3 12,766 + RR42_RS00030 0.88 +0.7 12,821 + +2.7 12,824 + -0.1 12,825 - +0.1 12,874 + +1.3 12,874 + +0.1 12,874 + -1.0 12,875 - -0.5 12,884 + -0.0 12,884 + -0.2 12,885 - -0.8 12,885 - +2.3 12,885 - -0.5 12,954 + -1.1 12,973 + +0.2 12,973 + +1.8 12,973 + +0.1 12,974 - -0.9 13,079 + +0.0 13,080 - +0.1 13,127 + -1.3 13,127 + -0.1 13,128 - -0.0 13,128 - +0.7 13,583 + RR42_RS00035 0.70 +1.0 13,639 + RR42_RS00035 0.80 -0.1 13,640 - RR42_RS00035 0.80 -1.6 13,684 - RR42_RS00035 0.88 -0.9 13,686 + RR42_RS00035 0.88 -0.9 13,686 + RR42_RS00035 0.88 +0.9 13,686 + RR42_RS00035 0.88 +1.2 13,687 - RR42_RS00035 0.88 +0.2 13,792 - -0.4 13,792 - +0.3 13,879 - +1.3 13,879 - +0.5 13,879 - -1.9 13,901 + -1.6 13,901 + -0.9 13,902 - -0.4 13,902 - -0.9 13,902 - +0.1 13,902 - -1.4 14,067 - RR42_RS00040 0.16 +0.2 14,067 - RR42_RS00040 0.16 +1.1 14,130 + RR42_RS00040 0.26 -2.1 14,131 - RR42_RS00040 0.26 -0.8 14,131 - RR42_RS00040 0.26 -1.3 14,184 + RR42_RS00040 0.34 +0.7 14,184 + RR42_RS00040 0.34 +0.2 14,184 + RR42_RS00040 0.34 -0.4 14,185 - RR42_RS00040 0.34 -0.7 14,185 - RR42_RS00040 0.34 -0.3 14,504 + RR42_RS00040 0.86 -0.0 14,505 - RR42_RS00040 0.86 -0.1 14,573 + -0.1 14,574 - -0.6 14,575 + +0.4 14,601 - +0.7 14,617 - -0.0 14,617 - -1.7
Or see this region's nucleotide sequence