Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02296

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02294 and CCNA_02295 overlap by 22 nucleotidesCCNA_02295 and CCNA_02296 are separated by 9 nucleotidesCCNA_02296 and CCNA_02297 are separated by 138 nucleotidesCCNA_02297 and CCNA_02298 overlap by 59 nucleotides CCNA_02294: CCNA_02294 - argininosuccinate lyase, at 2,441,149 to 2,442,567 _02294 CCNA_02295: CCNA_02295 - hypothetical protein, at 2,442,546 to 2,442,866 _02295 CCNA_02296: CCNA_02296 - diaminopimelate decarboxylase, at 2,442,876 to 2,444,141 _02296 CCNA_02297: CCNA_02297 - hypoxanthine-guanine phosphoribosyltransferase, at 2,444,280 to 2,444,861 _02297 CCNA_02298: CCNA_02298 - MJ0042 family finger-like domain protein, at 2,444,803 to 2,445,762 _02298 Position (kb) 2442 2443 2444 2445Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2442.561 kb on + strandat 2442.574 kb on - strandat 2442.674 kb on - strand, within CCNA_02295at 2442.698 kb on - strand, within CCNA_02295at 2442.705 kb on + strand, within CCNA_02295at 2442.711 kb on + strand, within CCNA_02295at 2442.715 kb on + strand, within CCNA_02295at 2442.719 kb on - strand, within CCNA_02295at 2442.719 kb on - strand, within CCNA_02295at 2442.795 kb on + strand, within CCNA_02295at 2442.800 kb on + strand, within CCNA_02295at 2443.582 kb on + strand, within CCNA_02296at 2443.715 kb on + strand, within CCNA_02296at 2444.154 kb on - strandat 2444.202 kb on - strandat 2444.215 kb on + strandat 2444.223 kb on - strandat 2444.304 kb on - strandat 2444.387 kb on - strand, within CCNA_02297at 2444.448 kb on - strand, within CCNA_02297at 2444.481 kb on - strand, within CCNA_02297at 2444.509 kb on + strand, within CCNA_02297at 2444.578 kb on - strand, within CCNA_02297at 2444.606 kb on + strand, within CCNA_02297at 2444.640 kb on - strand, within CCNA_02297at 2444.646 kb on - strand, within CCNA_02297at 2444.650 kb on + strand, within CCNA_02297at 2444.655 kb on + strand, within CCNA_02297at 2444.661 kb on - strand, within CCNA_02297at 2444.691 kb on - strand, within CCNA_02297at 2444.697 kb on + strand, within CCNA_02297at 2444.705 kb on - strand, within CCNA_02297at 2444.771 kb on - strand, within CCNA_02297at 2444.791 kb on + strand, within CCNA_02297at 2444.837 kb on - strandat 2444.865 kb on - strandat 2444.871 kb on + strandat 2444.895 kb on + strandat 2444.954 kb on + strand, within CCNA_02298at 2444.971 kb on + strand, within CCNA_02298at 2445.119 kb on - strand, within CCNA_02298at 2445.132 kb on - strand, within CCNA_02298

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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2,442,561 + -3.2
2,442,574 - -0.0
2,442,674 - CCNA_02295 0.40 +0.3
2,442,698 - CCNA_02295 0.47 -1.5
2,442,705 + CCNA_02295 0.50 -0.4
2,442,711 + CCNA_02295 0.51 -1.3
2,442,715 + CCNA_02295 0.53 -1.9
2,442,719 - CCNA_02295 0.54 -3.1
2,442,719 - CCNA_02295 0.54 -1.2
2,442,795 + CCNA_02295 0.78 -1.2
2,442,800 + CCNA_02295 0.79 -0.7
2,443,582 + CCNA_02296 0.56 -0.5
2,443,715 + CCNA_02296 0.66 -0.7
2,444,154 - +0.2
2,444,202 - +0.4
2,444,215 + -0.3
2,444,223 - +0.5
2,444,304 - +1.2
2,444,387 - CCNA_02297 0.18 +1.3
2,444,448 - CCNA_02297 0.29 +1.3
2,444,481 - CCNA_02297 0.35 +1.1
2,444,509 + CCNA_02297 0.39 +0.7
2,444,578 - CCNA_02297 0.51 +1.8
2,444,606 + CCNA_02297 0.56 -1.0
2,444,640 - CCNA_02297 0.62 +1.9
2,444,646 - CCNA_02297 0.63 +2.4
2,444,650 + CCNA_02297 0.64 -0.4
2,444,655 + CCNA_02297 0.64 -1.0
2,444,661 - CCNA_02297 0.65 +2.6
2,444,691 - CCNA_02297 0.71 +1.6
2,444,697 + CCNA_02297 0.72 -0.3
2,444,705 - CCNA_02297 0.73 +1.1
2,444,771 - CCNA_02297 0.84 +1.2
2,444,791 + CCNA_02297 0.88 +0.2
2,444,837 - +1.1
2,444,865 - +1.4
2,444,871 + +0.7
2,444,895 + +2.3
2,444,954 + CCNA_02298 0.16 -2.0
2,444,971 + CCNA_02298 0.17 +1.2
2,445,119 - CCNA_02298 0.33 +1.0
2,445,132 - CCNA_02298 0.34 -1.2

Or see this region's nucleotide sequence