Experiment: D-Maltose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01495 and CCNA_01496 are separated by 61 nucleotides CCNA_01496 and CCNA_01497 are separated by 2 nucleotides CCNA_01497 and CCNA_01498 are separated by 101 nucleotides
CCNA_01495: CCNA_01495 - deoxyribodipyrimidine photolyase, at 1,604,575 to 1,606,026
_01495
CCNA_01496: CCNA_01496 - 2-dehydro-3-deoxyphosphooctonate aldolase, at 1,606,088 to 1,606,951
_01496
CCNA_01497: CCNA_01497 - ADP-L-glycero-D-manno-heptose-6-epimerase, at 1,606,954 to 1,607,955
_01497
CCNA_01498: CCNA_01498 - 3-hydroxy-3-methylglutaryl CoA synthase, at 1,608,057 to 1,609,523
_01498
Position (kb)
1606
1607
1608 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1605.957 kb on - strand at 1605.957 kb on - strand at 1605.957 kb on - strand at 1606.002 kb on + strand at 1606.028 kb on + strand at 1606.028 kb on + strand at 1606.034 kb on + strand at 1606.036 kb on - strand at 1606.064 kb on + strand at 1606.096 kb on + strand at 1606.936 kb on + strand at 1606.944 kb on - strand at 1606.969 kb on + strand at 1606.969 kb on + strand at 1607.228 kb on + strand, within CCNA_01497 at 1607.228 kb on + strand, within CCNA_01497 at 1607.424 kb on + strand, within CCNA_01497 at 1607.424 kb on + strand, within CCNA_01497 at 1607.424 kb on + strand, within CCNA_01497 at 1607.542 kb on + strand, within CCNA_01497 at 1607.701 kb on + strand, within CCNA_01497 at 1607.842 kb on + strand, within CCNA_01497 at 1607.845 kb on + strand, within CCNA_01497 at 1607.957 kb on - strand at 1607.976 kb on + strand at 1608.002 kb on + strand at 1608.002 kb on + strand at 1608.010 kb on - strand at 1608.010 kb on - strand at 1608.024 kb on + strand at 1608.024 kb on + strand at 1608.032 kb on - strand at 1608.032 kb on - strand at 1608.040 kb on - strand at 1608.077 kb on + strand at 1608.131 kb on + strand at 1608.139 kb on - strand at 1608.139 kb on - strand at 1608.139 kb on - strand at 1608.139 kb on - strand at 1608.139 kb on - strand at 1608.139 kb on - strand at 1608.149 kb on + strand at 1608.150 kb on + strand at 1608.157 kb on - strand at 1608.169 kb on - strand at 1608.169 kb on - strand at 1608.169 kb on - strand at 1608.169 kb on - strand at 1608.169 kb on - strand at 1608.169 kb on - strand at 1608.169 kb on - strand at 1608.169 kb on - strand at 1608.169 kb on - strand at 1608.176 kb on + strand at 1608.200 kb on - strand at 1608.201 kb on + strand at 1608.206 kb on + strand, within CCNA_01498 at 1608.209 kb on - strand, within CCNA_01498 at 1608.272 kb on + strand, within CCNA_01498 at 1608.306 kb on - strand, within CCNA_01498 at 1608.357 kb on + strand, within CCNA_01498 at 1608.388 kb on + strand, within CCNA_01498 at 1608.388 kb on + strand, within CCNA_01498 at 1608.396 kb on - strand, within CCNA_01498 at 1608.402 kb on + strand, within CCNA_01498 at 1608.403 kb on + strand, within CCNA_01498 at 1608.438 kb on - strand, within CCNA_01498 at 1608.438 kb on - strand, within CCNA_01498 at 1608.474 kb on + strand, within CCNA_01498 at 1608.474 kb on + strand, within CCNA_01498 at 1608.598 kb on - strand, within CCNA_01498 at 1608.620 kb on + strand, within CCNA_01498 at 1608.630 kb on - strand, within CCNA_01498 at 1608.790 kb on + strand, within CCNA_01498 at 1608.806 kb on + strand, within CCNA_01498 at 1608.861 kb on - strand, within CCNA_01498 at 1608.896 kb on + strand, within CCNA_01498 at 1608.921 kb on - strand, within CCNA_01498 at 1608.933 kb on + strand, within CCNA_01498
Per-strain Table
Position Strand Gene LocusTag Fraction D-Maltose (C) remove 1,605,957 - -0.7 1,605,957 - -2.2 1,605,957 - -1.8 1,606,002 + +0.3 1,606,028 + +1.6 1,606,028 + -0.9 1,606,034 + +1.3 1,606,036 - -0.2 1,606,064 + -1.4 1,606,096 + +1.8 1,606,936 + +1.0 1,606,944 - -0.3 1,606,969 + -1.5 1,606,969 + +0.1 1,607,228 + CCNA_01497 0.27 -0.6 1,607,228 + CCNA_01497 0.27 -0.1 1,607,424 + CCNA_01497 0.47 +0.9 1,607,424 + CCNA_01497 0.47 -1.7 1,607,424 + CCNA_01497 0.47 -1.7 1,607,542 + CCNA_01497 0.59 -1.6 1,607,701 + CCNA_01497 0.75 -1.3 1,607,842 + CCNA_01497 0.89 -0.2 1,607,845 + CCNA_01497 0.89 -0.9 1,607,957 - -1.1 1,607,976 + +0.5 1,608,002 + +0.8 1,608,002 + +0.7 1,608,010 - +0.2 1,608,010 - -1.4 1,608,024 + +0.9 1,608,024 + +1.5 1,608,032 - -0.3 1,608,032 - +0.9 1,608,040 - -1.1 1,608,077 + +0.3 1,608,131 + +1.5 1,608,139 - -0.6 1,608,139 - -1.6 1,608,139 - -0.1 1,608,139 - +0.5 1,608,139 - -2.9 1,608,139 - -2.2 1,608,149 + +0.9 1,608,150 + -0.5 1,608,157 - -2.6 1,608,169 - -1.9 1,608,169 - -0.8 1,608,169 - -1.2 1,608,169 - -1.7 1,608,169 - -2.0 1,608,169 - -1.2 1,608,169 - -1.0 1,608,169 - -0.6 1,608,169 - -0.5 1,608,176 + -1.0 1,608,200 - +0.7 1,608,201 + +0.8 1,608,206 + CCNA_01498 0.10 +0.2 1,608,209 - CCNA_01498 0.10 -1.6 1,608,272 + CCNA_01498 0.15 +0.4 1,608,306 - CCNA_01498 0.17 -0.0 1,608,357 + CCNA_01498 0.20 +1.4 1,608,388 + CCNA_01498 0.23 +1.8 1,608,388 + CCNA_01498 0.23 +0.7 1,608,396 - CCNA_01498 0.23 +0.1 1,608,402 + CCNA_01498 0.24 +1.0 1,608,403 + CCNA_01498 0.24 +0.7 1,608,438 - CCNA_01498 0.26 -1.5 1,608,438 - CCNA_01498 0.26 -1.2 1,608,474 + CCNA_01498 0.28 -0.3 1,608,474 + CCNA_01498 0.28 +0.5 1,608,598 - CCNA_01498 0.37 -2.1 1,608,620 + CCNA_01498 0.38 -0.6 1,608,630 - CCNA_01498 0.39 -1.2 1,608,790 + CCNA_01498 0.50 -1.0 1,608,806 + CCNA_01498 0.51 -1.9 1,608,861 - CCNA_01498 0.55 -1.8 1,608,896 + CCNA_01498 0.57 -1.8 1,608,921 - CCNA_01498 0.59 +2.5 1,608,933 + CCNA_01498 0.60 -0.9
Or see this region's nucleotide sequence