Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01497

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01495 and CCNA_01496 are separated by 61 nucleotidesCCNA_01496 and CCNA_01497 are separated by 2 nucleotidesCCNA_01497 and CCNA_01498 are separated by 101 nucleotides CCNA_01495: CCNA_01495 - deoxyribodipyrimidine photolyase, at 1,604,575 to 1,606,026 _01495 CCNA_01496: CCNA_01496 - 2-dehydro-3-deoxyphosphooctonate aldolase, at 1,606,088 to 1,606,951 _01496 CCNA_01497: CCNA_01497 - ADP-L-glycero-D-manno-heptose-6-epimerase, at 1,606,954 to 1,607,955 _01497 CCNA_01498: CCNA_01498 - 3-hydroxy-3-methylglutaryl CoA synthase, at 1,608,057 to 1,609,523 _01498 Position (kb) 1606 1607 1608Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1605.957 kb on - strandat 1605.957 kb on - strandat 1605.957 kb on - strandat 1606.002 kb on + strandat 1606.028 kb on + strandat 1606.028 kb on + strandat 1606.034 kb on + strandat 1606.036 kb on - strandat 1606.064 kb on + strandat 1606.096 kb on + strandat 1606.936 kb on + strandat 1606.944 kb on - strandat 1606.969 kb on + strandat 1606.969 kb on + strandat 1607.228 kb on + strand, within CCNA_01497at 1607.228 kb on + strand, within CCNA_01497at 1607.424 kb on + strand, within CCNA_01497at 1607.424 kb on + strand, within CCNA_01497at 1607.424 kb on + strand, within CCNA_01497at 1607.542 kb on + strand, within CCNA_01497at 1607.701 kb on + strand, within CCNA_01497at 1607.842 kb on + strand, within CCNA_01497at 1607.845 kb on + strand, within CCNA_01497at 1607.957 kb on - strandat 1607.976 kb on + strandat 1608.002 kb on + strandat 1608.002 kb on + strandat 1608.010 kb on - strandat 1608.010 kb on - strandat 1608.024 kb on + strandat 1608.024 kb on + strandat 1608.032 kb on - strandat 1608.032 kb on - strandat 1608.040 kb on - strandat 1608.077 kb on + strandat 1608.131 kb on + strandat 1608.139 kb on - strandat 1608.139 kb on - strandat 1608.139 kb on - strandat 1608.139 kb on - strandat 1608.139 kb on - strandat 1608.139 kb on - strandat 1608.149 kb on + strandat 1608.150 kb on + strandat 1608.157 kb on - strandat 1608.169 kb on - strandat 1608.169 kb on - strandat 1608.169 kb on - strandat 1608.169 kb on - strandat 1608.169 kb on - strandat 1608.169 kb on - strandat 1608.169 kb on - strandat 1608.169 kb on - strandat 1608.169 kb on - strandat 1608.176 kb on + strandat 1608.200 kb on - strandat 1608.201 kb on + strandat 1608.206 kb on + strand, within CCNA_01498at 1608.209 kb on - strand, within CCNA_01498at 1608.272 kb on + strand, within CCNA_01498at 1608.306 kb on - strand, within CCNA_01498at 1608.357 kb on + strand, within CCNA_01498at 1608.388 kb on + strand, within CCNA_01498at 1608.388 kb on + strand, within CCNA_01498at 1608.396 kb on - strand, within CCNA_01498at 1608.402 kb on + strand, within CCNA_01498at 1608.403 kb on + strand, within CCNA_01498at 1608.438 kb on - strand, within CCNA_01498at 1608.438 kb on - strand, within CCNA_01498at 1608.474 kb on + strand, within CCNA_01498at 1608.474 kb on + strand, within CCNA_01498at 1608.598 kb on - strand, within CCNA_01498at 1608.620 kb on + strand, within CCNA_01498at 1608.630 kb on - strand, within CCNA_01498at 1608.790 kb on + strand, within CCNA_01498at 1608.806 kb on + strand, within CCNA_01498at 1608.861 kb on - strand, within CCNA_01498at 1608.896 kb on + strand, within CCNA_01498at 1608.921 kb on - strand, within CCNA_01498at 1608.933 kb on + strand, within CCNA_01498

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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1,605,957 - -0.7
1,605,957 - -2.2
1,605,957 - -1.8
1,606,002 + +0.3
1,606,028 + +1.6
1,606,028 + -0.9
1,606,034 + +1.3
1,606,036 - -0.2
1,606,064 + -1.4
1,606,096 + +1.8
1,606,936 + +1.0
1,606,944 - -0.3
1,606,969 + -1.5
1,606,969 + +0.1
1,607,228 + CCNA_01497 0.27 -0.6
1,607,228 + CCNA_01497 0.27 -0.1
1,607,424 + CCNA_01497 0.47 +0.9
1,607,424 + CCNA_01497 0.47 -1.7
1,607,424 + CCNA_01497 0.47 -1.7
1,607,542 + CCNA_01497 0.59 -1.6
1,607,701 + CCNA_01497 0.75 -1.3
1,607,842 + CCNA_01497 0.89 -0.2
1,607,845 + CCNA_01497 0.89 -0.9
1,607,957 - -1.1
1,607,976 + +0.5
1,608,002 + +0.8
1,608,002 + +0.7
1,608,010 - +0.2
1,608,010 - -1.4
1,608,024 + +0.9
1,608,024 + +1.5
1,608,032 - -0.3
1,608,032 - +0.9
1,608,040 - -1.1
1,608,077 + +0.3
1,608,131 + +1.5
1,608,139 - -0.6
1,608,139 - -1.6
1,608,139 - -0.1
1,608,139 - +0.5
1,608,139 - -2.9
1,608,139 - -2.2
1,608,149 + +0.9
1,608,150 + -0.5
1,608,157 - -2.6
1,608,169 - -1.9
1,608,169 - -0.8
1,608,169 - -1.2
1,608,169 - -1.7
1,608,169 - -2.0
1,608,169 - -1.2
1,608,169 - -1.0
1,608,169 - -0.6
1,608,169 - -0.5
1,608,176 + -1.0
1,608,200 - +0.7
1,608,201 + +0.8
1,608,206 + CCNA_01498 0.10 +0.2
1,608,209 - CCNA_01498 0.10 -1.6
1,608,272 + CCNA_01498 0.15 +0.4
1,608,306 - CCNA_01498 0.17 -0.0
1,608,357 + CCNA_01498 0.20 +1.4
1,608,388 + CCNA_01498 0.23 +1.8
1,608,388 + CCNA_01498 0.23 +0.7
1,608,396 - CCNA_01498 0.23 +0.1
1,608,402 + CCNA_01498 0.24 +1.0
1,608,403 + CCNA_01498 0.24 +0.7
1,608,438 - CCNA_01498 0.26 -1.5
1,608,438 - CCNA_01498 0.26 -1.2
1,608,474 + CCNA_01498 0.28 -0.3
1,608,474 + CCNA_01498 0.28 +0.5
1,608,598 - CCNA_01498 0.37 -2.1
1,608,620 + CCNA_01498 0.38 -0.6
1,608,630 - CCNA_01498 0.39 -1.2
1,608,790 + CCNA_01498 0.50 -1.0
1,608,806 + CCNA_01498 0.51 -1.9
1,608,861 - CCNA_01498 0.55 -1.8
1,608,896 + CCNA_01498 0.57 -1.8
1,608,921 - CCNA_01498 0.59 +2.5
1,608,933 + CCNA_01498 0.60 -0.9

Or see this region's nucleotide sequence