Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00514

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_03885 and CCNA_00514 are separated by 143 nucleotidesCCNA_00514 and CCNA_00515 are separated by 415 nucleotides CCNA_03885: CCNA_03885 - Abi superfamily/CAAX amino terminal protease, at 527,284 to 527,934 _03885 CCNA_00514: CCNA_00514 - pirin, at 528,078 to 528,908 _00514 CCNA_00515: CCNA_00515 - 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase, at 529,324 to 531,657 _00515 Position (kb) 528 529Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 527.088 kb on + strandat 527.114 kb on + strandat 527.134 kb on + strandat 527.134 kb on + strandat 527.139 kb on + strandat 527.140 kb on - strandat 527.140 kb on - strandat 527.142 kb on - strandat 527.142 kb on - strandat 527.142 kb on - strandat 527.145 kb on + strandat 527.168 kb on + strandat 527.168 kb on + strandat 527.168 kb on + strandat 527.193 kb on - strandat 527.226 kb on + strandat 527.231 kb on + strandat 527.239 kb on - strandat 527.239 kb on - strandat 527.239 kb on - strandat 527.244 kb on - strandat 527.272 kb on + strandat 527.280 kb on - strandat 527.321 kb on - strandat 527.326 kb on - strandat 527.362 kb on + strand, within CCNA_03885at 527.362 kb on + strand, within CCNA_03885at 527.362 kb on + strand, within CCNA_03885at 527.372 kb on + strand, within CCNA_03885at 527.372 kb on + strand, within CCNA_03885at 527.431 kb on + strand, within CCNA_03885at 527.444 kb on + strand, within CCNA_03885at 527.467 kb on - strand, within CCNA_03885at 527.467 kb on - strand, within CCNA_03885at 527.494 kb on + strand, within CCNA_03885at 527.494 kb on + strand, within CCNA_03885at 527.502 kb on - strand, within CCNA_03885at 527.549 kb on - strand, within CCNA_03885at 527.622 kb on + strand, within CCNA_03885at 527.629 kb on - strand, within CCNA_03885at 527.638 kb on + strand, within CCNA_03885at 527.645 kb on + strand, within CCNA_03885at 527.645 kb on + strand, within CCNA_03885at 527.709 kb on - strand, within CCNA_03885at 527.709 kb on - strand, within CCNA_03885at 527.740 kb on + strand, within CCNA_03885at 527.812 kb on + strand, within CCNA_03885at 527.815 kb on - strand, within CCNA_03885at 527.830 kb on - strand, within CCNA_03885at 527.844 kb on + strand, within CCNA_03885at 527.844 kb on + strand, within CCNA_03885at 527.845 kb on + strand, within CCNA_03885at 527.852 kb on - strand, within CCNA_03885at 527.858 kb on - strand, within CCNA_03885at 527.898 kb on + strandat 527.900 kb on + strandat 527.900 kb on + strandat 527.900 kb on + strandat 527.900 kb on + strandat 527.900 kb on + strandat 527.908 kb on + strandat 527.908 kb on + strandat 527.973 kb on - strandat 527.978 kb on - strandat 527.984 kb on - strandat 528.003 kb on + strandat 528.010 kb on - strandat 528.083 kb on + strandat 528.110 kb on + strandat 528.116 kb on + strandat 528.124 kb on - strandat 528.124 kb on - strandat 528.124 kb on - strandat 528.130 kb on + strandat 528.143 kb on + strandat 528.151 kb on - strandat 528.170 kb on + strand, within CCNA_00514at 528.179 kb on - strand, within CCNA_00514at 528.205 kb on + strand, within CCNA_00514at 528.224 kb on - strand, within CCNA_00514at 528.260 kb on - strand, within CCNA_00514at 528.266 kb on + strand, within CCNA_00514at 528.272 kb on - strand, within CCNA_00514at 528.302 kb on - strand, within CCNA_00514at 528.311 kb on + strand, within CCNA_00514at 528.311 kb on + strand, within CCNA_00514at 528.319 kb on - strand, within CCNA_00514at 528.330 kb on + strand, within CCNA_00514at 528.337 kb on - strand, within CCNA_00514at 528.338 kb on - strand, within CCNA_00514at 528.369 kb on + strand, within CCNA_00514at 528.405 kb on + strand, within CCNA_00514at 528.405 kb on + strand, within CCNA_00514at 528.413 kb on - strand, within CCNA_00514at 528.424 kb on + strand, within CCNA_00514at 528.424 kb on + strand, within CCNA_00514at 528.432 kb on - strand, within CCNA_00514at 528.432 kb on - strand, within CCNA_00514at 528.436 kb on + strand, within CCNA_00514at 528.436 kb on + strand, within CCNA_00514at 528.621 kb on + strand, within CCNA_00514at 528.645 kb on - strand, within CCNA_00514at 528.645 kb on - strand, within CCNA_00514at 528.662 kb on + strand, within CCNA_00514at 528.690 kb on + strand, within CCNA_00514at 528.690 kb on + strand, within CCNA_00514at 528.698 kb on - strand, within CCNA_00514at 528.713 kb on - strand, within CCNA_00514at 528.757 kb on - strand, within CCNA_00514at 528.777 kb on + strand, within CCNA_00514at 528.802 kb on - strand, within CCNA_00514at 528.832 kb on + strandat 528.856 kb on + strandat 528.864 kb on + strandat 528.864 kb on - strandat 528.878 kb on - strandat 528.902 kb on + strandat 528.910 kb on - strandat 528.915 kb on - strandat 528.972 kb on + strandat 529.040 kb on - strandat 529.074 kb on - strandat 529.127 kb on + strandat 529.147 kb on + strandat 529.147 kb on + strandat 529.152 kb on + strandat 529.155 kb on - strandat 529.155 kb on - strandat 529.155 kb on - strandat 529.160 kb on - strandat 529.189 kb on - strandat 529.264 kb on + strandat 529.371 kb on - strandat 529.398 kb on + strandat 529.405 kb on + strandat 529.423 kb on + strandat 529.429 kb on - strandat 529.439 kb on - strandat 529.449 kb on - strandat 529.450 kb on - strandat 529.527 kb on - strandat 529.539 kb on - strandat 529.544 kb on - strandat 529.570 kb on + strand, within CCNA_00515at 529.570 kb on + strand, within CCNA_00515at 529.570 kb on + strand, within CCNA_00515at 529.570 kb on + strand, within CCNA_00515at 529.578 kb on - strand, within CCNA_00515at 529.630 kb on + strand, within CCNA_00515at 529.638 kb on - strand, within CCNA_00515at 529.638 kb on - strand, within CCNA_00515at 529.660 kb on + strand, within CCNA_00515at 529.674 kb on - strand, within CCNA_00515at 529.810 kb on + strand, within CCNA_00515at 529.849 kb on - strand, within CCNA_00515at 529.869 kb on + strand, within CCNA_00515at 529.878 kb on + strand, within CCNA_00515at 529.878 kb on + strand, within CCNA_00515at 529.884 kb on + strand, within CCNA_00515at 529.884 kb on + strand, within CCNA_00515at 529.884 kb on + strand, within CCNA_00515at 529.884 kb on + strand, within CCNA_00515at 529.886 kb on - strand, within CCNA_00515at 529.892 kb on - strand, within CCNA_00515at 529.892 kb on - strand, within CCNA_00515at 529.898 kb on - strand, within CCNA_00515

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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527,088 + +0.0
527,114 + +0.7
527,134 + -0.6
527,134 + +1.1
527,139 + +3.3
527,140 - +1.9
527,140 - -1.4
527,142 - -1.0
527,142 - -0.3
527,142 - -0.5
527,145 + -0.2
527,168 + +0.4
527,168 + -1.5
527,168 + -2.4
527,193 - -0.1
527,226 + +1.9
527,231 + +0.5
527,239 - -0.9
527,239 - -0.2
527,239 - -0.5
527,244 - +1.3
527,272 + -0.9
527,280 - -2.5
527,321 - +0.2
527,326 - -0.4
527,362 + CCNA_03885 0.12 +0.0
527,362 + CCNA_03885 0.12 +0.7
527,362 + CCNA_03885 0.12 -2.1
527,372 + CCNA_03885 0.14 +0.0
527,372 + CCNA_03885 0.14 -0.7
527,431 + CCNA_03885 0.23 -0.4
527,444 + CCNA_03885 0.25 +0.8
527,467 - CCNA_03885 0.28 -0.9
527,467 - CCNA_03885 0.28 -0.7
527,494 + CCNA_03885 0.32 -0.9
527,494 + CCNA_03885 0.32 -1.3
527,502 - CCNA_03885 0.33 +0.7
527,549 - CCNA_03885 0.41 +0.8
527,622 + CCNA_03885 0.52 +1.6
527,629 - CCNA_03885 0.53 -0.6
527,638 + CCNA_03885 0.54 +0.4
527,645 + CCNA_03885 0.55 +1.4
527,645 + CCNA_03885 0.55 +2.0
527,709 - CCNA_03885 0.65 -0.1
527,709 - CCNA_03885 0.65 -0.3
527,740 + CCNA_03885 0.70 +0.6
527,812 + CCNA_03885 0.81 +0.3
527,815 - CCNA_03885 0.82 -2.4
527,830 - CCNA_03885 0.84 -0.3
527,844 + CCNA_03885 0.86 -0.1
527,844 + CCNA_03885 0.86 +0.8
527,845 + CCNA_03885 0.86 +0.1
527,852 - CCNA_03885 0.87 -2.1
527,858 - CCNA_03885 0.88 -0.8
527,898 + +3.2
527,900 + +2.1
527,900 + +0.9
527,900 + -0.2
527,900 + +0.0
527,900 + +0.1
527,908 + -1.4
527,908 + -0.0
527,973 - +2.6
527,978 - +0.6
527,984 - -0.5
528,003 + -0.1
528,010 - +0.7
528,083 + +0.3
528,110 + +0.3
528,116 + -0.4
528,124 - -1.2
528,124 - +0.1
528,124 - -1.3
528,130 + -0.0
528,143 + +0.7
528,151 - -1.5
528,170 + CCNA_00514 0.11 +0.8
528,179 - CCNA_00514 0.12 +2.3
528,205 + CCNA_00514 0.15 +0.7
528,224 - CCNA_00514 0.18 -0.8
528,260 - CCNA_00514 0.22 -1.6
528,266 + CCNA_00514 0.23 -0.4
528,272 - CCNA_00514 0.23 -3.0
528,302 - CCNA_00514 0.27 +2.3
528,311 + CCNA_00514 0.28 +1.1
528,311 + CCNA_00514 0.28 +0.6
528,319 - CCNA_00514 0.29 +1.5
528,330 + CCNA_00514 0.30 +0.4
528,337 - CCNA_00514 0.31 -0.8
528,338 - CCNA_00514 0.31 +0.1
528,369 + CCNA_00514 0.35 +0.9
528,405 + CCNA_00514 0.39 +0.2
528,405 + CCNA_00514 0.39 +0.1
528,413 - CCNA_00514 0.40 -0.9
528,424 + CCNA_00514 0.42 +1.7
528,424 + CCNA_00514 0.42 +0.9
528,432 - CCNA_00514 0.43 +1.4
528,432 - CCNA_00514 0.43 +0.5
528,436 + CCNA_00514 0.43 -0.1
528,436 + CCNA_00514 0.43 -1.1
528,621 + CCNA_00514 0.65 +0.3
528,645 - CCNA_00514 0.68 -0.5
528,645 - CCNA_00514 0.68 -0.2
528,662 + CCNA_00514 0.70 +0.7
528,690 + CCNA_00514 0.74 +0.6
528,690 + CCNA_00514 0.74 +1.6
528,698 - CCNA_00514 0.75 -0.9
528,713 - CCNA_00514 0.76 +0.9
528,757 - CCNA_00514 0.82 -0.5
528,777 + CCNA_00514 0.84 +2.2
528,802 - CCNA_00514 0.87 -0.1
528,832 + +2.3
528,856 + +2.3
528,864 + -0.7
528,864 - -0.3
528,878 - -0.1
528,902 + +2.2
528,910 - -1.0
528,915 - -0.3
528,972 + -1.4
529,040 - -2.5
529,074 - -0.7
529,127 + -0.8
529,147 + -3.4
529,147 + -2.9
529,152 + +0.7
529,155 - -3.3
529,155 - +0.3
529,155 - -2.3
529,160 - -0.0
529,189 - -2.3
529,264 + -1.0
529,371 - -2.4
529,398 + -4.1
529,405 + -2.9
529,423 + -1.3
529,429 - -1.7
529,439 - -1.4
529,449 - -2.1
529,450 - +0.3
529,527 - -1.2
529,539 - -1.9
529,544 - -3.4
529,570 + CCNA_00515 0.11 -3.6
529,570 + CCNA_00515 0.11 -1.8
529,570 + CCNA_00515 0.11 -2.8
529,570 + CCNA_00515 0.11 -2.8
529,578 - CCNA_00515 0.11 -3.0
529,630 + CCNA_00515 0.13 -2.9
529,638 - CCNA_00515 0.13 -1.9
529,638 - CCNA_00515 0.13 -0.4
529,660 + CCNA_00515 0.14 -0.7
529,674 - CCNA_00515 0.15 -1.2
529,810 + CCNA_00515 0.21 -1.6
529,849 - CCNA_00515 0.22 -1.9
529,869 + CCNA_00515 0.23 -4.0
529,878 + CCNA_00515 0.24 -1.0
529,878 + CCNA_00515 0.24 -3.1
529,884 + CCNA_00515 0.24 -2.7
529,884 + CCNA_00515 0.24 -1.5
529,884 + CCNA_00515 0.24 -4.1
529,884 + CCNA_00515 0.24 -2.3
529,886 - CCNA_00515 0.24 -0.2
529,892 - CCNA_00515 0.24 +0.6
529,892 - CCNA_00515 0.24 -1.9
529,898 - CCNA_00515 0.25 -1.9

Or see this region's nucleotide sequence