Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS00935

Experiment: R2A with Cobalt chloride 0.08 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS00930 and CA265_RS00935 are separated by 6 nucleotidesCA265_RS00935 and CA265_RS00940 are separated by 563 nucleotidesCA265_RS00940 and CA265_RS00945 overlap by 38 nucleotides CA265_RS00930: CA265_RS00930 - CusA/CzcA family heavy metal efflux RND transporter, at 229,140 to 233,504 _RS00930 CA265_RS00935: CA265_RS00935 - hypothetical protein, at 233,511 to 234,644 _RS00935 CA265_RS00940: CA265_RS00940 - hypothetical protein, at 235,208 to 235,444 _RS00940 CA265_RS00945: CA265_RS00945 - SusC/RagA family TonB-linked outer membrane protein, at 235,407 to 238,538 _RS00945 Position (kb) 233 234 235Strain fitness (log2 ratio) -3 -2 -1 0 1at 232.546 kb on - strand, within CA265_RS00930at 232.564 kb on + strand, within CA265_RS00930at 232.568 kb on + strand, within CA265_RS00930at 232.648 kb on - strand, within CA265_RS00930at 232.660 kb on + strand, within CA265_RS00930at 232.685 kb on - strand, within CA265_RS00930at 232.704 kb on + strand, within CA265_RS00930at 232.817 kb on - strand, within CA265_RS00930at 232.831 kb on - strand, within CA265_RS00930at 232.831 kb on - strand, within CA265_RS00930at 232.831 kb on - strand, within CA265_RS00930at 232.943 kb on + strand, within CA265_RS00930at 232.944 kb on - strand, within CA265_RS00930at 233.022 kb on - strand, within CA265_RS00930at 233.032 kb on + strand, within CA265_RS00930at 233.057 kb on + strand, within CA265_RS00930at 233.078 kb on + strandat 233.098 kb on - strandat 233.105 kb on + strandat 233.134 kb on + strandat 233.134 kb on + strandat 233.242 kb on + strandat 233.340 kb on - strandat 233.433 kb on + strandat 233.436 kb on + strandat 233.502 kb on + strandat 233.502 kb on + strandat 233.507 kb on + strandat 233.507 kb on + strandat 233.508 kb on - strandat 233.615 kb on + strandat 233.660 kb on + strand, within CA265_RS00935at 233.660 kb on + strand, within CA265_RS00935at 233.660 kb on + strand, within CA265_RS00935at 233.661 kb on - strand, within CA265_RS00935at 233.705 kb on + strand, within CA265_RS00935at 233.706 kb on - strand, within CA265_RS00935at 233.752 kb on + strand, within CA265_RS00935at 233.752 kb on + strand, within CA265_RS00935at 233.758 kb on + strand, within CA265_RS00935at 233.758 kb on + strand, within CA265_RS00935at 233.772 kb on + strand, within CA265_RS00935at 233.773 kb on - strand, within CA265_RS00935at 233.773 kb on - strand, within CA265_RS00935at 233.801 kb on + strand, within CA265_RS00935at 233.850 kb on + strand, within CA265_RS00935at 233.871 kb on + strand, within CA265_RS00935at 233.901 kb on - strand, within CA265_RS00935at 233.913 kb on + strand, within CA265_RS00935at 233.913 kb on + strand, within CA265_RS00935at 233.915 kb on + strand, within CA265_RS00935at 233.915 kb on + strand, within CA265_RS00935at 234.001 kb on + strand, within CA265_RS00935at 234.037 kb on + strand, within CA265_RS00935at 234.045 kb on - strand, within CA265_RS00935at 234.140 kb on + strand, within CA265_RS00935at 234.141 kb on - strand, within CA265_RS00935at 234.144 kb on + strand, within CA265_RS00935at 234.144 kb on + strand, within CA265_RS00935at 234.145 kb on - strand, within CA265_RS00935at 234.162 kb on - strand, within CA265_RS00935at 234.206 kb on + strand, within CA265_RS00935at 234.207 kb on - strand, within CA265_RS00935at 234.261 kb on - strand, within CA265_RS00935at 234.339 kb on - strand, within CA265_RS00935at 234.397 kb on + strand, within CA265_RS00935at 234.398 kb on - strand, within CA265_RS00935at 234.431 kb on - strand, within CA265_RS00935at 234.470 kb on + strand, within CA265_RS00935at 234.559 kb on + strandat 234.559 kb on + strandat 234.560 kb on - strandat 234.560 kb on - strandat 234.642 kb on + strandat 234.660 kb on - strandat 234.660 kb on - strandat 234.660 kb on - strandat 234.815 kb on - strandat 234.888 kb on + strandat 235.045 kb on + strandat 235.124 kb on - strandat 235.134 kb on - strandat 235.135 kb on + strandat 235.135 kb on + strandat 235.135 kb on + strandat 235.237 kb on + strand, within CA265_RS00940at 235.238 kb on - strand, within CA265_RS00940at 235.258 kb on + strand, within CA265_RS00940at 235.302 kb on - strand, within CA265_RS00940at 235.303 kb on + strand, within CA265_RS00940at 235.304 kb on - strand, within CA265_RS00940at 235.391 kb on + strand, within CA265_RS00940at 235.452 kb on - strandat 235.567 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Cobalt chloride 0.08 mM
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232,546 - CA265_RS00930 0.78 -0.0
232,564 + CA265_RS00930 0.78 -0.6
232,568 + CA265_RS00930 0.79 -1.1
232,648 - CA265_RS00930 0.80 -1.2
232,660 + CA265_RS00930 0.81 -1.6
232,685 - CA265_RS00930 0.81 -0.6
232,704 + CA265_RS00930 0.82 -1.4
232,817 - CA265_RS00930 0.84 -0.9
232,831 - CA265_RS00930 0.85 -0.4
232,831 - CA265_RS00930 0.85 +0.4
232,831 - CA265_RS00930 0.85 -0.9
232,943 + CA265_RS00930 0.87 -2.2
232,944 - CA265_RS00930 0.87 -0.7
233,022 - CA265_RS00930 0.89 -0.2
233,032 + CA265_RS00930 0.89 -0.9
233,057 + CA265_RS00930 0.90 -0.4
233,078 + -1.9
233,098 - -1.9
233,105 + -0.5
233,134 + +0.1
233,134 + -1.3
233,242 + -1.2
233,340 - -1.3
233,433 + +0.1
233,436 + -0.8
233,502 + +0.4
233,502 + -1.0
233,507 + -0.2
233,507 + -1.1
233,508 - -1.8
233,615 + -0.3
233,660 + CA265_RS00935 0.13 -2.3
233,660 + CA265_RS00935 0.13 +0.6
233,660 + CA265_RS00935 0.13 +0.4
233,661 - CA265_RS00935 0.13 +0.6
233,705 + CA265_RS00935 0.17 -1.0
233,706 - CA265_RS00935 0.17 -0.1
233,752 + CA265_RS00935 0.21 -1.5
233,752 + CA265_RS00935 0.21 -2.0
233,758 + CA265_RS00935 0.22 -1.3
233,758 + CA265_RS00935 0.22 -1.4
233,772 + CA265_RS00935 0.23 -2.1
233,773 - CA265_RS00935 0.23 -1.5
233,773 - CA265_RS00935 0.23 -2.6
233,801 + CA265_RS00935 0.26 -1.2
233,850 + CA265_RS00935 0.30 +0.9
233,871 + CA265_RS00935 0.32 -0.6
233,901 - CA265_RS00935 0.34 -0.8
233,913 + CA265_RS00935 0.35 +0.3
233,913 + CA265_RS00935 0.35 -1.1
233,915 + CA265_RS00935 0.36 -1.1
233,915 + CA265_RS00935 0.36 -0.4
234,001 + CA265_RS00935 0.43 -1.4
234,037 + CA265_RS00935 0.46 -0.2
234,045 - CA265_RS00935 0.47 -1.2
234,140 + CA265_RS00935 0.55 -1.0
234,141 - CA265_RS00935 0.56 +0.6
234,144 + CA265_RS00935 0.56 -0.4
234,144 + CA265_RS00935 0.56 -2.3
234,145 - CA265_RS00935 0.56 -0.9
234,162 - CA265_RS00935 0.57 -0.6
234,206 + CA265_RS00935 0.61 -2.4
234,207 - CA265_RS00935 0.61 -0.9
234,261 - CA265_RS00935 0.66 -0.8
234,339 - CA265_RS00935 0.73 -0.7
234,397 + CA265_RS00935 0.78 -1.7
234,398 - CA265_RS00935 0.78 -2.3
234,431 - CA265_RS00935 0.81 -0.7
234,470 + CA265_RS00935 0.85 -2.2
234,559 + +0.1
234,559 + -1.9
234,560 - -1.3
234,560 - -0.3
234,642 + -1.0
234,660 - -0.6
234,660 - +0.1
234,660 - -0.1
234,815 - -0.4
234,888 + +0.1
235,045 + +0.4
235,124 - -0.5
235,134 - -3.2
235,135 + -0.5
235,135 + +0.1
235,135 + +0.6
235,237 + CA265_RS00940 0.12 -0.3
235,238 - CA265_RS00940 0.13 -0.0
235,258 + CA265_RS00940 0.21 -0.6
235,302 - CA265_RS00940 0.40 -0.3
235,303 + CA265_RS00940 0.40 +0.4
235,304 - CA265_RS00940 0.41 -1.5
235,391 + CA265_RS00940 0.77 -1.2
235,452 - -0.7
235,567 + -0.9

Or see this region's nucleotide sequence