Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS00575

Experiment: R2A with Cobalt chloride 0.08 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS00570 and CA265_RS00575 are separated by 30 nucleotidesCA265_RS00575 and CA265_RS00580 are separated by 139 nucleotides CA265_RS00570: CA265_RS00570 - hypothetical protein, at 126,030 to 126,410 _RS00570 CA265_RS00575: CA265_RS00575 - permease, at 126,441 to 127,865 _RS00575 CA265_RS00580: CA265_RS00580 - bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II, at 128,005 to 129,216 _RS00580 Position (kb) 126 127 128Strain fitness (log2 ratio) -2 -1 0 1at 125.466 kb on - strandat 125.502 kb on + strandat 125.544 kb on - strandat 125.580 kb on - strandat 125.585 kb on + strandat 125.586 kb on - strandat 125.586 kb on - strandat 125.639 kb on - strandat 125.673 kb on - strandat 125.903 kb on - strandat 125.962 kb on + strandat 126.023 kb on + strandat 126.026 kb on + strandat 126.056 kb on - strandat 126.085 kb on + strand, within CA265_RS00570at 126.092 kb on + strand, within CA265_RS00570at 126.164 kb on + strand, within CA265_RS00570at 126.221 kb on + strand, within CA265_RS00570at 126.221 kb on + strand, within CA265_RS00570at 126.296 kb on - strand, within CA265_RS00570at 126.329 kb on + strand, within CA265_RS00570at 126.408 kb on + strandat 127.864 kb on - strandat 127.879 kb on + strandat 127.883 kb on + strandat 127.883 kb on + strandat 127.884 kb on - strandat 127.884 kb on - strandat 127.924 kb on + strandat 127.967 kb on + strandat 127.974 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Cobalt chloride 0.08 mM
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125,466 - +0.6
125,502 + -0.4
125,544 - +1.2
125,580 - +0.6
125,585 + -0.6
125,586 - -0.1
125,586 - +0.2
125,639 - -0.0
125,673 - +0.3
125,903 - +0.4
125,962 + -0.3
126,023 + -0.5
126,026 + -0.9
126,056 - +0.3
126,085 + CA265_RS00570 0.14 +0.4
126,092 + CA265_RS00570 0.16 +0.1
126,164 + CA265_RS00570 0.35 -0.2
126,221 + CA265_RS00570 0.50 +0.3
126,221 + CA265_RS00570 0.50 -0.2
126,296 - CA265_RS00570 0.70 +0.1
126,329 + CA265_RS00570 0.78 +0.1
126,408 + -1.9
127,864 - -0.7
127,879 + -0.7
127,883 + -0.3
127,883 + +0.3
127,884 - +1.1
127,884 - +1.0
127,924 + -1.7
127,967 + -1.0
127,974 + -1.4

Or see this region's nucleotide sequence