Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS29255

Experiment: R2A with Cobalt chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS29245 and RR42_RS29250 overlap by 8 nucleotidesRR42_RS29250 and RR42_RS29255 are separated by 174 nucleotidesRR42_RS29255 and RR42_RS29260 are separated by 129 nucleotides RR42_RS29245: RR42_RS29245 - nitrile hydratase, at 1,915,672 to 1,916,343 _RS29245 RR42_RS29250: RR42_RS29250 - nitrile hydratase, at 1,916,336 to 1,916,722 _RS29250 RR42_RS29255: RR42_RS29255 - GTP cyclohydrolase, at 1,916,897 to 1,917,493 _RS29255 RR42_RS29260: RR42_RS29260 - hypothetical protein, at 1,917,623 to 1,918,972 _RS29260 Position (kb) 1916 1917 1918Strain fitness (log2 ratio) -2 -1 0 1at 1916.131 kb on + strand, within RR42_RS29245at 1916.131 kb on + strand, within RR42_RS29245at 1916.132 kb on - strand, within RR42_RS29245at 1916.230 kb on + strandat 1916.230 kb on + strand, within RR42_RS29245at 1916.231 kb on - strand, within RR42_RS29245at 1916.311 kb on + strandat 1916.312 kb on - strandat 1916.312 kb on - strandat 1916.312 kb on - strandat 1916.579 kb on + strand, within RR42_RS29250at 1916.579 kb on + strand, within RR42_RS29250at 1916.579 kb on + strand, within RR42_RS29250at 1916.579 kb on + strand, within RR42_RS29250at 1916.580 kb on - strand, within RR42_RS29250at 1916.580 kb on - strand, within RR42_RS29250at 1916.580 kb on - strand, within RR42_RS29250at 1916.582 kb on + strand, within RR42_RS29250at 1916.583 kb on - strand, within RR42_RS29250at 1916.583 kb on - strand, within RR42_RS29250at 1916.744 kb on + strandat 1916.825 kb on - strandat 1916.837 kb on + strandat 1916.845 kb on - strandat 1916.960 kb on - strand, within RR42_RS29255at 1916.960 kb on - strand, within RR42_RS29255at 1917.164 kb on + strand, within RR42_RS29255at 1917.164 kb on + strand, within RR42_RS29255at 1917.218 kb on + strand, within RR42_RS29255at 1917.219 kb on - strand, within RR42_RS29255at 1917.219 kb on - strand, within RR42_RS29255at 1917.245 kb on - strand, within RR42_RS29255at 1917.293 kb on + strand, within RR42_RS29255at 1917.294 kb on - strand, within RR42_RS29255at 1917.294 kb on - strand, within RR42_RS29255at 1917.418 kb on + strand, within RR42_RS29255at 1917.418 kb on + strand, within RR42_RS29255at 1917.419 kb on - strand, within RR42_RS29255at 1917.757 kb on + strandat 1917.777 kb on - strand, within RR42_RS29260at 1917.810 kb on - strand, within RR42_RS29260at 1917.924 kb on - strand, within RR42_RS29260at 1917.947 kb on + strand, within RR42_RS29260at 1917.947 kb on + strand, within RR42_RS29260at 1917.947 kb on + strand, within RR42_RS29260at 1917.947 kb on + strand, within RR42_RS29260at 1917.948 kb on - strand, within RR42_RS29260at 1917.948 kb on - strand, within RR42_RS29260at 1917.948 kb on - strand, within RR42_RS29260at 1917.953 kb on + strand, within RR42_RS29260at 1917.953 kb on + strand, within RR42_RS29260at 1917.953 kb on + strand, within RR42_RS29260at 1917.954 kb on - strand, within RR42_RS29260at 1917.954 kb on - strand, within RR42_RS29260at 1917.954 kb on - strand, within RR42_RS29260at 1917.954 kb on - strand, within RR42_RS29260at 1917.954 kb on - strand, within RR42_RS29260at 1917.954 kb on - strand, within RR42_RS29260at 1917.954 kb on - strand, within RR42_RS29260at 1917.954 kb on - strand, within RR42_RS29260at 1917.954 kb on - strand, within RR42_RS29260at 1918.085 kb on + strand, within RR42_RS29260at 1918.086 kb on - strand, within RR42_RS29260at 1918.091 kb on + strand, within RR42_RS29260at 1918.091 kb on + strand, within RR42_RS29260at 1918.091 kb on + strand, within RR42_RS29260at 1918.091 kb on + strand, within RR42_RS29260at 1918.092 kb on - strand, within RR42_RS29260at 1918.092 kb on - strand, within RR42_RS29260at 1918.335 kb on - strand, within RR42_RS29260

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Cobalt chloride 0.5 mM
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1,916,131 + RR42_RS29245 0.68 +0.8
1,916,131 + RR42_RS29245 0.68 -0.2
1,916,132 - RR42_RS29245 0.68 -0.0
1,916,230 + +1.6
1,916,230 + RR42_RS29245 0.83 -1.3
1,916,231 - RR42_RS29245 0.83 -1.3
1,916,311 + +0.3
1,916,312 - -1.4
1,916,312 - -2.3
1,916,312 - -0.6
1,916,579 + RR42_RS29250 0.63 +0.3
1,916,579 + RR42_RS29250 0.63 +1.0
1,916,579 + RR42_RS29250 0.63 -0.1
1,916,579 + RR42_RS29250 0.63 +1.5
1,916,580 - RR42_RS29250 0.63 +0.4
1,916,580 - RR42_RS29250 0.63 +0.1
1,916,580 - RR42_RS29250 0.63 +0.4
1,916,582 + RR42_RS29250 0.64 -2.0
1,916,583 - RR42_RS29250 0.64 +0.9
1,916,583 - RR42_RS29250 0.64 -0.7
1,916,744 + -0.9
1,916,825 - +0.6
1,916,837 + +0.8
1,916,845 - -1.2
1,916,960 - RR42_RS29255 0.11 -2.2
1,916,960 - RR42_RS29255 0.11 +0.1
1,917,164 + RR42_RS29255 0.45 -0.5
1,917,164 + RR42_RS29255 0.45 -0.6
1,917,218 + RR42_RS29255 0.54 +1.2
1,917,219 - RR42_RS29255 0.54 +0.8
1,917,219 - RR42_RS29255 0.54 -1.4
1,917,245 - RR42_RS29255 0.58 -1.7
1,917,293 + RR42_RS29255 0.66 +0.6
1,917,294 - RR42_RS29255 0.66 +0.8
1,917,294 - RR42_RS29255 0.66 -0.3
1,917,418 + RR42_RS29255 0.87 +0.8
1,917,418 + RR42_RS29255 0.87 -0.5
1,917,419 - RR42_RS29255 0.87 +1.6
1,917,757 + -0.4
1,917,777 - RR42_RS29260 0.11 +1.6
1,917,810 - RR42_RS29260 0.14 -1.4
1,917,924 - RR42_RS29260 0.22 -0.1
1,917,947 + RR42_RS29260 0.24 -1.4
1,917,947 + RR42_RS29260 0.24 -0.1
1,917,947 + RR42_RS29260 0.24 -0.9
1,917,947 + RR42_RS29260 0.24 -1.0
1,917,948 - RR42_RS29260 0.24 -1.1
1,917,948 - RR42_RS29260 0.24 +1.2
1,917,948 - RR42_RS29260 0.24 -0.4
1,917,953 + RR42_RS29260 0.24 -0.2
1,917,953 + RR42_RS29260 0.24 -0.3
1,917,953 + RR42_RS29260 0.24 -0.4
1,917,954 - RR42_RS29260 0.25 +0.0
1,917,954 - RR42_RS29260 0.25 -0.0
1,917,954 - RR42_RS29260 0.25 -2.1
1,917,954 - RR42_RS29260 0.25 -1.0
1,917,954 - RR42_RS29260 0.25 +0.4
1,917,954 - RR42_RS29260 0.25 -1.7
1,917,954 - RR42_RS29260 0.25 +0.0
1,917,954 - RR42_RS29260 0.25 +0.4
1,917,954 - RR42_RS29260 0.25 +0.2
1,918,085 + RR42_RS29260 0.34 +1.6
1,918,086 - RR42_RS29260 0.34 +0.0
1,918,091 + RR42_RS29260 0.35 +0.9
1,918,091 + RR42_RS29260 0.35 -0.7
1,918,091 + RR42_RS29260 0.35 -1.7
1,918,091 + RR42_RS29260 0.35 +1.2
1,918,092 - RR42_RS29260 0.35 -0.5
1,918,092 - RR42_RS29260 0.35 -0.6
1,918,335 - RR42_RS29260 0.53 -1.1

Or see this region's nucleotide sequence