Experiment: R2A with Cobalt chloride 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS27270 and RR42_RS27275 are separated by 78 nucleotides RR42_RS27275 and RR42_RS27280 are separated by 84 nucleotides
RR42_RS27270: RR42_RS27270 - NADP-dependent oxidoreductase, at 1,471,057 to 1,472,088
_RS27270
RR42_RS27275: RR42_RS27275 - alpha-dehydro-beta-deoxy-D-glucarate aldolase, at 1,472,167 to 1,472,934
_RS27275
RR42_RS27280: RR42_RS27280 - hypothetical protein, at 1,473,019 to 1,473,999
_RS27280
Position (kb) 1472
1473 Strain fitness (log2 ratio) -1
0
1
2
3 at 1471.430 kb on + strand, within RR42_RS27270 at 1471.430 kb on + strand, within RR42_RS27270 at 1471.466 kb on + strand, within RR42_RS27270 at 1471.467 kb on - strand, within RR42_RS27270 at 1471.541 kb on + strand, within RR42_RS27270 at 1471.541 kb on + strand, within RR42_RS27270 at 1471.541 kb on + strand, within RR42_RS27270 at 1471.542 kb on - strand, within RR42_RS27270 at 1471.709 kb on + strand, within RR42_RS27270 at 1471.709 kb on + strand, within RR42_RS27270 at 1471.724 kb on + strand, within RR42_RS27270 at 1471.725 kb on - strand, within RR42_RS27270 at 1471.739 kb on + strand, within RR42_RS27270 at 1471.739 kb on + strand, within RR42_RS27270 at 1471.916 kb on + strand, within RR42_RS27270 at 1471.916 kb on + strand, within RR42_RS27270 at 1471.916 kb on + strand, within RR42_RS27270 at 1471.916 kb on + strand, within RR42_RS27270 at 1471.916 kb on + strand, within RR42_RS27270 at 1471.916 kb on + strand, within RR42_RS27270 at 1471.917 kb on - strand, within RR42_RS27270 at 1471.917 kb on - strand, within RR42_RS27270 at 1471.917 kb on - strand, within RR42_RS27270 at 1472.168 kb on + strand at 1472.168 kb on + strand at 1472.268 kb on - strand, within RR42_RS27275 at 1472.268 kb on - strand at 1472.520 kb on + strand, within RR42_RS27275 at 1472.521 kb on - strand, within RR42_RS27275 at 1472.645 kb on + strand, within RR42_RS27275 at 1472.646 kb on - strand, within RR42_RS27275 at 1472.976 kb on + strand at 1472.976 kb on + strand at 1472.977 kb on - strand at 1472.977 kb on - strand at 1472.977 kb on - strand at 1472.977 kb on - strand at 1472.977 kb on - strand at 1473.176 kb on - strand, within RR42_RS27280 at 1473.356 kb on + strand, within RR42_RS27280 at 1473.614 kb on + strand, within RR42_RS27280 at 1473.681 kb on - strand, within RR42_RS27280 at 1473.731 kb on + strand, within RR42_RS27280 at 1473.882 kb on - strand, within RR42_RS27280 at 1473.882 kb on - strand, within RR42_RS27280 at 1473.882 kb on - strand, within RR42_RS27280
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Cobalt chloride 0.5 mM remove 1,471,430 + RR42_RS27270 0.36 -0.4 1,471,430 + RR42_RS27270 0.36 -0.4 1,471,466 + RR42_RS27270 0.40 -1.0 1,471,467 - RR42_RS27270 0.40 -0.4 1,471,541 + RR42_RS27270 0.47 -0.2 1,471,541 + RR42_RS27270 0.47 +0.5 1,471,541 + RR42_RS27270 0.47 -0.5 1,471,542 - RR42_RS27270 0.47 -0.7 1,471,709 + RR42_RS27270 0.63 +0.3 1,471,709 + RR42_RS27270 0.63 +1.0 1,471,724 + RR42_RS27270 0.65 +0.1 1,471,725 - RR42_RS27270 0.65 -0.7 1,471,739 + RR42_RS27270 0.66 +0.1 1,471,739 + RR42_RS27270 0.66 -0.2 1,471,916 + RR42_RS27270 0.83 -0.0 1,471,916 + RR42_RS27270 0.83 +0.0 1,471,916 + RR42_RS27270 0.83 +0.8 1,471,916 + RR42_RS27270 0.83 +0.7 1,471,916 + RR42_RS27270 0.83 +0.3 1,471,916 + RR42_RS27270 0.83 -0.6 1,471,917 - RR42_RS27270 0.83 +0.3 1,471,917 - RR42_RS27270 0.83 +2.8 1,471,917 - RR42_RS27270 0.83 -0.5 1,472,168 + -0.4 1,472,168 + +0.8 1,472,268 - RR42_RS27275 0.13 -0.3 1,472,268 - -0.2 1,472,520 + RR42_RS27275 0.46 +0.6 1,472,521 - RR42_RS27275 0.46 +0.4 1,472,645 + RR42_RS27275 0.62 +0.0 1,472,646 - RR42_RS27275 0.62 +0.3 1,472,976 + -0.2 1,472,976 + +2.0 1,472,977 - +0.3 1,472,977 - -0.9 1,472,977 - -0.1 1,472,977 - +0.6 1,472,977 - +0.3 1,473,176 - RR42_RS27280 0.16 +0.5 1,473,356 + RR42_RS27280 0.34 +0.8 1,473,614 + RR42_RS27280 0.61 +0.2 1,473,681 - RR42_RS27280 0.67 -1.4 1,473,731 + RR42_RS27280 0.73 +0.3 1,473,882 - RR42_RS27280 0.88 +0.8 1,473,882 - RR42_RS27280 0.88 +0.8 1,473,882 - RR42_RS27280 0.88 -0.6
Or see this region's nucleotide sequence