Experiment: R2A with Cobalt chloride 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS22310 and RR42_RS22315 are separated by 202 nucleotides RR42_RS22315 and RR42_RS22320 are separated by 35 nucleotides RR42_RS22320 and RR42_RS22325 overlap by 4 nucleotides
RR42_RS22310: RR42_RS22310 - LysR family transcriptional regulator, at 346,289 to 347,188
_RS22310
RR42_RS22315: RR42_RS22315 - LysR family transcriptional regulator, at 347,391 to 347,831
_RS22315
RR42_RS22320: RR42_RS22320 - MFS transporter, at 347,867 to 349,171
_RS22320
RR42_RS22325: RR42_RS22325 - hypothetical protein, at 349,168 to 350,265
_RS22325
Position (kb) 347
348
349
350 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 347.069 kb on - strand, within RR42_RS22310 at 347.069 kb on - strand, within RR42_RS22310 at 347.070 kb on + strand, within RR42_RS22310 at 347.070 kb on + strand, within RR42_RS22310 at 347.071 kb on - strand, within RR42_RS22310 at 347.071 kb on - strand, within RR42_RS22310 at 347.200 kb on + strand at 347.219 kb on + strand at 347.219 kb on + strand at 347.254 kb on - strand at 347.259 kb on + strand at 347.545 kb on - strand, within RR42_RS22315 at 347.653 kb on + strand, within RR42_RS22315 at 347.654 kb on - strand, within RR42_RS22315 at 347.654 kb on - strand, within RR42_RS22315 at 347.654 kb on - strand, within RR42_RS22315 at 347.654 kb on - strand, within RR42_RS22315 at 347.675 kb on + strand, within RR42_RS22315 at 347.784 kb on + strand, within RR42_RS22315 at 347.785 kb on - strand, within RR42_RS22315 at 347.922 kb on + strand at 347.922 kb on + strand at 347.923 kb on - strand at 347.923 kb on - strand at 347.923 kb on - strand at 347.923 kb on - strand at 347.923 kb on - strand at 348.354 kb on + strand, within RR42_RS22320 at 348.354 kb on + strand, within RR42_RS22320 at 348.354 kb on + strand, within RR42_RS22320 at 348.355 kb on - strand, within RR42_RS22320 at 348.355 kb on - strand, within RR42_RS22320 at 348.355 kb on - strand, within RR42_RS22320 at 348.685 kb on - strand, within RR42_RS22320 at 348.732 kb on + strand, within RR42_RS22320 at 348.750 kb on + strand, within RR42_RS22320 at 348.750 kb on + strand, within RR42_RS22320 at 348.750 kb on + strand, within RR42_RS22320 at 348.751 kb on - strand, within RR42_RS22320 at 348.808 kb on - strand, within RR42_RS22320 at 348.808 kb on - strand, within RR42_RS22320 at 348.939 kb on + strand, within RR42_RS22320 at 348.940 kb on - strand, within RR42_RS22320 at 349.044 kb on + strand at 349.045 kb on - strand at 349.056 kb on + strand at 349.056 kb on + strand at 349.056 kb on + strand at 349.056 kb on + strand at 349.056 kb on + strand at 349.056 kb on + strand at 349.057 kb on - strand at 349.057 kb on - strand at 349.068 kb on - strand at 349.355 kb on + strand, within RR42_RS22325 at 349.355 kb on + strand, within RR42_RS22325 at 349.355 kb on + strand, within RR42_RS22325 at 349.355 kb on + strand, within RR42_RS22325 at 349.356 kb on - strand, within RR42_RS22325 at 349.380 kb on + strand, within RR42_RS22325 at 349.465 kb on - strand, within RR42_RS22325 at 349.517 kb on + strand, within RR42_RS22325 at 349.647 kb on - strand, within RR42_RS22325 at 349.787 kb on + strand, within RR42_RS22325 at 349.787 kb on + strand, within RR42_RS22325 at 349.788 kb on - strand, within RR42_RS22325 at 349.788 kb on - strand, within RR42_RS22325 at 349.788 kb on - strand, within RR42_RS22325 at 349.797 kb on - strand, within RR42_RS22325 at 349.878 kb on + strand, within RR42_RS22325 at 349.879 kb on + strand, within RR42_RS22325 at 349.914 kb on - strand, within RR42_RS22325 at 350.051 kb on + strand, within RR42_RS22325 at 350.051 kb on + strand, within RR42_RS22325 at 350.051 kb on + strand, within RR42_RS22325 at 350.069 kb on + strand, within RR42_RS22325 at 350.070 kb on - strand, within RR42_RS22325
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Cobalt chloride 0.5 mM remove 347,069 - RR42_RS22310 0.87 +0.6 347,069 - RR42_RS22310 0.87 -0.6 347,070 + RR42_RS22310 0.87 +0.2 347,070 + RR42_RS22310 0.87 +0.9 347,071 - RR42_RS22310 0.87 +1.0 347,071 - RR42_RS22310 0.87 -0.3 347,200 + -0.2 347,219 + -0.4 347,219 + -0.4 347,254 - +0.7 347,259 + -1.1 347,545 - RR42_RS22315 0.35 +1.3 347,653 + RR42_RS22315 0.59 +0.4 347,654 - RR42_RS22315 0.60 -1.1 347,654 - RR42_RS22315 0.60 +1.3 347,654 - RR42_RS22315 0.60 -0.3 347,654 - RR42_RS22315 0.60 -1.6 347,675 + RR42_RS22315 0.64 -0.7 347,784 + RR42_RS22315 0.89 +0.1 347,785 - RR42_RS22315 0.89 -1.5 347,922 + -3.4 347,922 + -1.0 347,923 - +2.1 347,923 - +2.7 347,923 - -0.5 347,923 - -2.3 347,923 - -1.5 348,354 + RR42_RS22320 0.37 -3.0 348,354 + RR42_RS22320 0.37 +0.8 348,354 + RR42_RS22320 0.37 -1.8 348,355 - RR42_RS22320 0.37 -0.3 348,355 - RR42_RS22320 0.37 -0.6 348,355 - RR42_RS22320 0.37 -0.4 348,685 - RR42_RS22320 0.63 +0.8 348,732 + RR42_RS22320 0.66 -0.6 348,750 + RR42_RS22320 0.68 -0.9 348,750 + RR42_RS22320 0.68 -2.6 348,750 + RR42_RS22320 0.68 -0.1 348,751 - RR42_RS22320 0.68 +0.2 348,808 - RR42_RS22320 0.72 -0.5 348,808 - RR42_RS22320 0.72 -1.9 348,939 + RR42_RS22320 0.82 -3.0 348,940 - RR42_RS22320 0.82 -0.3 349,044 + +0.4 349,045 - -0.1 349,056 + +0.6 349,056 + +0.7 349,056 + +0.3 349,056 + -0.1 349,056 + -0.7 349,056 + -0.2 349,057 - +1.1 349,057 - +0.1 349,068 - +0.3 349,355 + RR42_RS22325 0.17 -0.4 349,355 + RR42_RS22325 0.17 -0.7 349,355 + RR42_RS22325 0.17 -0.4 349,355 + RR42_RS22325 0.17 -0.3 349,356 - RR42_RS22325 0.17 -0.7 349,380 + RR42_RS22325 0.19 -0.0 349,465 - RR42_RS22325 0.27 +0.8 349,517 + RR42_RS22325 0.32 -1.4 349,647 - RR42_RS22325 0.44 -0.3 349,787 + RR42_RS22325 0.56 +0.7 349,787 + RR42_RS22325 0.56 -0.5 349,788 - RR42_RS22325 0.56 +0.6 349,788 - RR42_RS22325 0.56 -0.5 349,788 - RR42_RS22325 0.56 +0.5 349,797 - RR42_RS22325 0.57 +0.3 349,878 + RR42_RS22325 0.65 +1.5 349,879 + RR42_RS22325 0.65 -1.0 349,914 - RR42_RS22325 0.68 -0.3 350,051 + RR42_RS22325 0.80 +0.7 350,051 + RR42_RS22325 0.80 +0.1 350,051 + RR42_RS22325 0.80 +1.4 350,069 + RR42_RS22325 0.82 +0.1 350,070 - RR42_RS22325 0.82 +1.0
Or see this region's nucleotide sequence