Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS20790

Experiment: R2A with Cobalt chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS20785 and RR42_RS20790 are separated by 243 nucleotidesRR42_RS20790 and RR42_RS20795 are separated by 100 nucleotidesRR42_RS20795 and RR42_RS20800 are separated by 428 nucleotides RR42_RS20785: RR42_RS20785 - acyltransferase, at 4,511,484 to 4,512,659 _RS20785 RR42_RS20790: RR42_RS20790 - isoprenylcysteine carboxyl methyltransferase, at 4,512,903 to 4,513,580 _RS20790 RR42_RS20795: RR42_RS20795 - hypothetical protein, at 4,513,681 to 4,514,133 _RS20795 RR42_RS20800: RR42_RS20800 - AraC family transcriptional regulator, at 4,514,562 to 4,515,392 _RS20800 Position (kb) 4512 4513 4514Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4512.008 kb on + strand, within RR42_RS20785at 4512.009 kb on - strand, within RR42_RS20785at 4512.009 kb on - strand, within RR42_RS20785at 4512.010 kb on + strand, within RR42_RS20785at 4512.010 kb on + strand, within RR42_RS20785at 4512.010 kb on + strand, within RR42_RS20785at 4512.010 kb on + strand, within RR42_RS20785at 4512.010 kb on + strand, within RR42_RS20785at 4512.010 kb on + strand, within RR42_RS20785at 4512.010 kb on + strand, within RR42_RS20785at 4512.010 kb on + strand, within RR42_RS20785at 4512.011 kb on - strand, within RR42_RS20785at 4512.011 kb on - strand, within RR42_RS20785at 4512.011 kb on - strand, within RR42_RS20785at 4512.011 kb on - strand, within RR42_RS20785at 4512.011 kb on - strand, within RR42_RS20785at 4512.011 kb on - strand, within RR42_RS20785at 4512.089 kb on - strand, within RR42_RS20785at 4512.168 kb on + strand, within RR42_RS20785at 4512.168 kb on + strand, within RR42_RS20785at 4512.168 kb on + strand, within RR42_RS20785at 4512.169 kb on - strand, within RR42_RS20785at 4512.190 kb on + strand, within RR42_RS20785at 4512.191 kb on - strand, within RR42_RS20785at 4512.191 kb on - strand, within RR42_RS20785at 4512.379 kb on + strand, within RR42_RS20785at 4512.380 kb on - strand, within RR42_RS20785at 4512.380 kb on - strand, within RR42_RS20785at 4512.386 kb on - strand, within RR42_RS20785at 4512.386 kb on - strand, within RR42_RS20785at 4512.386 kb on - strand, within RR42_RS20785at 4512.386 kb on - strand, within RR42_RS20785at 4512.422 kb on - strand, within RR42_RS20785at 4512.566 kb on - strandat 4512.642 kb on + strandat 4512.642 kb on + strandat 4512.642 kb on + strandat 4512.642 kb on + strandat 4512.667 kb on + strandat 4512.694 kb on + strandat 4512.694 kb on + strandat 4512.796 kb on + strandat 4512.796 kb on + strandat 4512.797 kb on - strandat 4512.832 kb on - strandat 4512.846 kb on - strandat 4512.846 kb on - strandat 4513.006 kb on - strand, within RR42_RS20790at 4513.359 kb on + strand, within RR42_RS20790at 4513.383 kb on + strand, within RR42_RS20790at 4513.438 kb on - strand, within RR42_RS20790at 4513.536 kb on + strandat 4513.537 kb on - strandat 4513.643 kb on + strandat 4513.643 kb on + strandat 4513.644 kb on - strandat 4513.732 kb on + strand, within RR42_RS20795at 4513.732 kb on + strand, within RR42_RS20795at 4513.732 kb on + strand, within RR42_RS20795at 4513.732 kb on + strand, within RR42_RS20795at 4513.732 kb on + strand, within RR42_RS20795at 4513.733 kb on - strand, within RR42_RS20795at 4513.733 kb on - strand, within RR42_RS20795at 4513.733 kb on - strand, within RR42_RS20795at 4513.802 kb on + strand, within RR42_RS20795at 4514.020 kb on + strand, within RR42_RS20795at 4514.021 kb on - strand, within RR42_RS20795at 4514.021 kb on - strand, within RR42_RS20795at 4514.031 kb on + strand, within RR42_RS20795at 4514.031 kb on + strand, within RR42_RS20795at 4514.032 kb on - strand, within RR42_RS20795at 4514.222 kb on + strandat 4514.223 kb on - strandat 4514.223 kb on - strandat 4514.240 kb on + strandat 4514.330 kb on + strandat 4514.330 kb on + strandat 4514.331 kb on - strandat 4514.376 kb on + strandat 4514.393 kb on + strandat 4514.395 kb on + strandat 4514.395 kb on + strandat 4514.395 kb on + strandat 4514.395 kb on + strandat 4514.395 kb on + strandat 4514.396 kb on - strandat 4514.396 kb on - strandat 4514.396 kb on - strandat 4514.396 kb on - strandat 4514.396 kb on - strandat 4514.396 kb on - strandat 4514.396 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Cobalt chloride 0.5 mM
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4,512,008 + RR42_RS20785 0.45 +0.5
4,512,009 - RR42_RS20785 0.45 +0.3
4,512,009 - RR42_RS20785 0.45 -0.5
4,512,010 + RR42_RS20785 0.45 -0.7
4,512,010 + RR42_RS20785 0.45 +0.4
4,512,010 + RR42_RS20785 0.45 +0.3
4,512,010 + RR42_RS20785 0.45 +1.1
4,512,010 + RR42_RS20785 0.45 -1.0
4,512,010 + RR42_RS20785 0.45 -0.0
4,512,010 + RR42_RS20785 0.45 -1.0
4,512,010 + RR42_RS20785 0.45 -0.7
4,512,011 - RR42_RS20785 0.45 -0.0
4,512,011 - RR42_RS20785 0.45 +0.3
4,512,011 - RR42_RS20785 0.45 +3.3
4,512,011 - RR42_RS20785 0.45 +0.7
4,512,011 - RR42_RS20785 0.45 +1.3
4,512,011 - RR42_RS20785 0.45 -0.4
4,512,089 - RR42_RS20785 0.51 +0.2
4,512,168 + RR42_RS20785 0.58 -0.7
4,512,168 + RR42_RS20785 0.58 -1.7
4,512,168 + RR42_RS20785 0.58 +1.0
4,512,169 - RR42_RS20785 0.58 +0.3
4,512,190 + RR42_RS20785 0.60 -2.2
4,512,191 - RR42_RS20785 0.60 +2.0
4,512,191 - RR42_RS20785 0.60 -0.1
4,512,379 + RR42_RS20785 0.76 -0.5
4,512,380 - RR42_RS20785 0.76 +0.3
4,512,380 - RR42_RS20785 0.76 -0.7
4,512,386 - RR42_RS20785 0.77 +0.1
4,512,386 - RR42_RS20785 0.77 -0.3
4,512,386 - RR42_RS20785 0.77 +1.0
4,512,386 - RR42_RS20785 0.77 +0.5
4,512,422 - RR42_RS20785 0.80 -1.1
4,512,566 - +0.4
4,512,642 + +1.5
4,512,642 + -0.2
4,512,642 + -0.0
4,512,642 + +0.6
4,512,667 + -0.0
4,512,694 + -1.8
4,512,694 + +0.8
4,512,796 + -0.8
4,512,796 + -0.6
4,512,797 - -1.2
4,512,832 - -1.8
4,512,846 - -0.6
4,512,846 - -0.8
4,513,006 - RR42_RS20790 0.15 -0.3
4,513,359 + RR42_RS20790 0.67 -0.4
4,513,383 + RR42_RS20790 0.71 -1.3
4,513,438 - RR42_RS20790 0.79 +1.1
4,513,536 + -0.8
4,513,537 - +1.3
4,513,643 + +0.6
4,513,643 + -3.0
4,513,644 - +1.4
4,513,732 + RR42_RS20795 0.11 +0.4
4,513,732 + RR42_RS20795 0.11 +0.7
4,513,732 + RR42_RS20795 0.11 +0.8
4,513,732 + RR42_RS20795 0.11 -0.1
4,513,732 + RR42_RS20795 0.11 -0.4
4,513,733 - RR42_RS20795 0.11 +1.4
4,513,733 - RR42_RS20795 0.11 -1.0
4,513,733 - RR42_RS20795 0.11 -0.0
4,513,802 + RR42_RS20795 0.27 -0.0
4,514,020 + RR42_RS20795 0.75 -0.3
4,514,021 - RR42_RS20795 0.75 +1.7
4,514,021 - RR42_RS20795 0.75 +1.5
4,514,031 + RR42_RS20795 0.77 +0.4
4,514,031 + RR42_RS20795 0.77 +1.5
4,514,032 - RR42_RS20795 0.77 -0.2
4,514,222 + +1.0
4,514,223 - -2.2
4,514,223 - +1.3
4,514,240 + -0.5
4,514,330 + +1.0
4,514,330 + +1.3
4,514,331 - +1.0
4,514,376 + -0.4
4,514,393 + +1.6
4,514,395 + +1.3
4,514,395 + +1.4
4,514,395 + -0.5
4,514,395 + +0.1
4,514,395 + -0.4
4,514,396 - +1.1
4,514,396 - -0.0
4,514,396 - -0.9
4,514,396 - -0.1
4,514,396 - -1.1
4,514,396 - +0.6
4,514,396 - -0.9

Or see this region's nucleotide sequence