Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS19130

Experiment: R2A with Cobalt chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS19125 and RR42_RS19130 are separated by 182 nucleotidesRR42_RS19130 and RR42_RS19135 are separated by 307 nucleotidesRR42_RS19135 and RR42_RS19140 are separated by 24 nucleotides RR42_RS19125: RR42_RS19125 - DNA-directed RNA polymerase subunit alpha, at 4,144,332 to 4,145,312 _RS19125 RR42_RS19130: RR42_RS19130 - 30S ribosomal protein S4, at 4,145,495 to 4,146,118 _RS19130 RR42_RS19135: RR42_RS19135 - 30S ribosomal protein S11, at 4,146,426 to 4,146,827 _RS19135 RR42_RS19140: RR42_RS19140 - 30S ribosomal protein S13, at 4,146,852 to 4,147,217 _RS19140 Position (kb) 4145 4146 4147Strain fitness (log2 ratio) -1 0 1at 4145.399 kb on - strandat 4145.399 kb on - strandat 4146.342 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Cobalt chloride 0.5 mM
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4,145,399 - +0.1
4,145,399 - -0.2
4,146,342 - +0.3

Or see this region's nucleotide sequence