Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS18850

Experiment: R2A with Cobalt chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS18845 and RR42_RS18850 are separated by 247 nucleotidesRR42_RS18850 and RR42_RS18855 are separated by 130 nucleotidesRR42_RS18855 and RR42_RS18860 are separated by 151 nucleotides RR42_RS18845: RR42_RS18845 - membrane protein, at 4,086,024 to 4,087,124 _RS18845 RR42_RS18850: RR42_RS18850 - preprotein translocase subunit TatC, at 4,087,372 to 4,088,169 _RS18850 RR42_RS18855: RR42_RS18855 - preprotein translocase, at 4,088,300 to 4,088,809 _RS18855 RR42_RS18860: RR42_RS18860 - protein translocase TatA, at 4,088,961 to 4,089,197 _RS18860 Position (kb) 4087 4088 4089Strain fitness (log2 ratio) -3 -2 -1 0 1at 4087.298 kb on + strandat 4087.299 kb on - strandat 4087.333 kb on - strandat 4087.455 kb on - strand, within RR42_RS18850at 4087.548 kb on - strand, within RR42_RS18850at 4087.548 kb on - strand, within RR42_RS18850at 4087.670 kb on + strand, within RR42_RS18850at 4087.758 kb on - strand, within RR42_RS18850at 4088.219 kb on + strandat 4088.220 kb on - strandat 4088.220 kb on - strandat 4088.220 kb on - strandat 4088.381 kb on + strand, within RR42_RS18855at 4088.381 kb on + strand, within RR42_RS18855at 4088.382 kb on - strand, within RR42_RS18855at 4088.400 kb on + strand, within RR42_RS18855at 4088.683 kb on + strand, within RR42_RS18855at 4088.683 kb on + strand, within RR42_RS18855at 4088.684 kb on - strand, within RR42_RS18855at 4088.684 kb on - strand, within RR42_RS18855at 4088.963 kb on - strandat 4088.963 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Cobalt chloride 0.5 mM
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4,087,298 + -1.3
4,087,299 - +1.4
4,087,333 - +0.4
4,087,455 - RR42_RS18850 0.10 -1.2
4,087,548 - RR42_RS18850 0.22 -1.3
4,087,548 - RR42_RS18850 0.22 -2.9
4,087,670 + RR42_RS18850 0.37 -1.3
4,087,758 - RR42_RS18850 0.48 -0.3
4,088,219 + -0.9
4,088,220 - -0.8
4,088,220 - -0.1
4,088,220 - -0.9
4,088,381 + RR42_RS18855 0.16 -2.8
4,088,381 + RR42_RS18855 0.16 -2.6
4,088,382 - RR42_RS18855 0.16 -0.8
4,088,400 + RR42_RS18855 0.20 +1.2
4,088,683 + RR42_RS18855 0.75 -2.9
4,088,683 + RR42_RS18855 0.75 -0.1
4,088,684 - RR42_RS18855 0.75 -2.0
4,088,684 - RR42_RS18855 0.75 +0.6
4,088,963 - -1.7
4,088,963 - +1.2

Or see this region's nucleotide sequence