Experiment: R2A with Cobalt chloride 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS16735 and RR42_RS16740 are separated by 219 nucleotides RR42_RS16740 and RR42_RS16745 are separated by 79 nucleotides RR42_RS16745 and RR42_RS16750 are separated by 56 nucleotides RR42_RS16750 and RR42_RS16755 are separated by 5 nucleotides
RR42_RS16735: RR42_RS16735 - LytR family transcriptional regulator, at 3,621,380 to 3,622,198
_RS16735
RR42_RS16740: RR42_RS16740 - hypothetical protein, at 3,622,418 to 3,622,684
_RS16740
RR42_RS16745: RR42_RS16745 - copper resistance protein CopQ, at 3,622,764 to 3,623,000
_RS16745
RR42_RS16750: RR42_RS16750 - transcriptional regulator, at 3,623,057 to 3,623,641
_RS16750
RR42_RS16755: RR42_RS16755 - FAD-linked oxidase, at 3,623,647 to 3,625,200
_RS16755
Position (kb)
3622
3623 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3621.484 kb on - strand, within RR42_RS16735 at 3621.659 kb on + strand, within RR42_RS16735 at 3621.660 kb on - strand, within RR42_RS16735 at 3621.660 kb on - strand, within RR42_RS16735 at 3621.695 kb on + strand, within RR42_RS16735 at 3621.702 kb on + strand, within RR42_RS16735 at 3621.702 kb on + strand, within RR42_RS16735 at 3621.962 kb on + strand, within RR42_RS16735 at 3621.962 kb on + strand, within RR42_RS16735 at 3621.963 kb on - strand, within RR42_RS16735 at 3621.963 kb on - strand, within RR42_RS16735 at 3622.074 kb on + strand, within RR42_RS16735 at 3622.172 kb on + strand at 3622.197 kb on - strand at 3622.307 kb on - strand at 3622.428 kb on + strand at 3622.506 kb on - strand, within RR42_RS16740 at 3622.542 kb on - strand, within RR42_RS16740 at 3622.628 kb on + strand, within RR42_RS16740 at 3622.629 kb on - strand, within RR42_RS16740 at 3622.698 kb on - strand at 3622.980 kb on + strand at 3623.409 kb on + strand, within RR42_RS16750 at 3623.469 kb on + strand, within RR42_RS16750 at 3623.469 kb on + strand, within RR42_RS16750 at 3623.470 kb on - strand, within RR42_RS16750 at 3623.567 kb on - strand, within RR42_RS16750 at 3623.648 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Cobalt chloride 0.5 mM remove 3,621,484 - RR42_RS16735 0.13 +1.1 3,621,659 + RR42_RS16735 0.34 +0.8 3,621,660 - RR42_RS16735 0.34 -1.1 3,621,660 - RR42_RS16735 0.34 -1.0 3,621,695 + RR42_RS16735 0.38 -1.0 3,621,702 + RR42_RS16735 0.39 -0.4 3,621,702 + RR42_RS16735 0.39 +0.0 3,621,962 + RR42_RS16735 0.71 +0.1 3,621,962 + RR42_RS16735 0.71 +0.3 3,621,963 - RR42_RS16735 0.71 +3.1 3,621,963 - RR42_RS16735 0.71 +0.3 3,622,074 + RR42_RS16735 0.85 +1.5 3,622,172 + +0.1 3,622,197 - -0.5 3,622,307 - -0.1 3,622,428 + -0.8 3,622,506 - RR42_RS16740 0.33 -0.0 3,622,542 - RR42_RS16740 0.46 +1.0 3,622,628 + RR42_RS16740 0.79 +2.1 3,622,629 - RR42_RS16740 0.79 -0.6 3,622,698 - +0.8 3,622,980 + +1.5 3,623,409 + RR42_RS16750 0.60 +0.1 3,623,469 + RR42_RS16750 0.70 +1.1 3,623,469 + RR42_RS16750 0.70 +0.1 3,623,470 - RR42_RS16750 0.71 +0.5 3,623,567 - RR42_RS16750 0.87 -0.5 3,623,648 + +0.1
Or see this region's nucleotide sequence