Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS13515

Experiment: R2A with Cobalt chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS13510 and RR42_RS13515 are separated by 65 nucleotidesRR42_RS13515 and RR42_RS13520 are separated by 56 nucleotides RR42_RS13510: RR42_RS13510 - carbamoyl phosphate synthase large subunit, at 2,914,406 to 2,917,654 _RS13510 RR42_RS13515: RR42_RS13515 - membrane protein, at 2,917,720 to 2,918,400 _RS13515 RR42_RS13520: RR42_RS13520 - carbamoyl phosphate synthase small subunit, at 2,918,457 to 2,919,593 _RS13520 Position (kb) 2917 2918 2919Strain fitness (log2 ratio) -1 0 1 2 3at 2918.133 kb on - strand, within RR42_RS13515at 2918.160 kb on - strand, within RR42_RS13515at 2918.259 kb on - strand, within RR42_RS13515at 2918.301 kb on - strand, within RR42_RS13515at 2918.301 kb on - strand, within RR42_RS13515at 2918.301 kb on - strand, within RR42_RS13515at 2918.301 kb on - strand, within RR42_RS13515at 2918.301 kb on - strand, within RR42_RS13515at 2918.301 kb on - strand, within RR42_RS13515at 2918.301 kb on - strand, within RR42_RS13515at 2918.427 kb on - strandat 2918.427 kb on - strandat 2918.459 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Cobalt chloride 0.5 mM
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2,918,133 - RR42_RS13515 0.61 +0.4
2,918,160 - RR42_RS13515 0.65 -0.7
2,918,259 - RR42_RS13515 0.79 +3.0
2,918,301 - RR42_RS13515 0.85 +1.8
2,918,301 - RR42_RS13515 0.85 +1.4
2,918,301 - RR42_RS13515 0.85 +1.8
2,918,301 - RR42_RS13515 0.85 +1.4
2,918,301 - RR42_RS13515 0.85 +1.9
2,918,301 - RR42_RS13515 0.85 +1.8
2,918,301 - RR42_RS13515 0.85 +1.7
2,918,427 - +1.8
2,918,427 - -0.7
2,918,459 - -0.9

Or see this region's nucleotide sequence