Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS11715

Experiment: R2A with Cobalt chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS11710 and RR42_RS11715 are separated by 797 nucleotides RR42_RS11710: RR42_RS11710 - hypothetical protein, at 2,506,189 to 2,506,416 _RS11710 RR42_RS11715: RR42_RS11715 - DNA-binding protein, at 2,507,214 to 2,507,735 _RS11715 Position (kb) 2507 2508Strain fitness (log2 ratio) -2 -1 0 1 2at 2506.458 kb on + strandat 2506.459 kb on - strandat 2506.459 kb on - strandat 2506.659 kb on + strandat 2506.660 kb on - strandat 2506.660 kb on - strandat 2506.960 kb on + strandat 2506.961 kb on - strandat 2506.961 kb on - strandat 2506.967 kb on - strandat 2507.126 kb on - strandat 2507.126 kb on - strandat 2507.129 kb on + strandat 2507.130 kb on - strandat 2507.130 kb on - strandat 2507.147 kb on - strandat 2507.148 kb on + strandat 2507.148 kb on + strandat 2507.148 kb on + strandat 2507.148 kb on + strandat 2507.149 kb on - strandat 2507.198 kb on + strandat 2507.198 kb on + strandat 2507.220 kb on + strandat 2507.240 kb on - strandat 2507.346 kb on + strand, within RR42_RS11715at 2507.367 kb on + strand, within RR42_RS11715at 2507.463 kb on + strand, within RR42_RS11715at 2507.463 kb on + strand, within RR42_RS11715at 2507.463 kb on + strand, within RR42_RS11715at 2507.464 kb on - strand, within RR42_RS11715at 2507.784 kb on + strandat 2507.810 kb on - strandat 2507.851 kb on + strandat 2507.862 kb on + strandat 2507.897 kb on + strandat 2507.907 kb on - strandat 2508.020 kb on + strandat 2508.020 kb on + strandat 2508.126 kb on + strandat 2508.207 kb on + strandat 2508.299 kb on + strandat 2508.510 kb on + strandat 2508.510 kb on + strandat 2508.511 kb on - strandat 2508.511 kb on - strandat 2508.539 kb on + strandat 2508.539 kb on + strandat 2508.540 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Cobalt chloride 0.5 mM
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2,506,458 + -0.9
2,506,459 - -0.9
2,506,459 - -0.0
2,506,659 + +1.5
2,506,660 - +0.2
2,506,660 - -1.0
2,506,960 + -1.0
2,506,961 - +1.8
2,506,961 - +0.5
2,506,967 - -1.6
2,507,126 - +0.1
2,507,126 - +0.5
2,507,129 + -0.2
2,507,130 - +0.0
2,507,130 - +0.3
2,507,147 - -0.2
2,507,148 + +0.2
2,507,148 + +1.3
2,507,148 + -0.8
2,507,148 + -0.2
2,507,149 - -0.4
2,507,198 + -1.0
2,507,198 + +0.0
2,507,220 + +0.5
2,507,240 - +1.2
2,507,346 + RR42_RS11715 0.25 -0.0
2,507,367 + RR42_RS11715 0.29 -0.3
2,507,463 + RR42_RS11715 0.48 +0.9
2,507,463 + RR42_RS11715 0.48 +0.9
2,507,463 + RR42_RS11715 0.48 +0.6
2,507,464 - RR42_RS11715 0.48 -0.2
2,507,784 + -0.5
2,507,810 - -0.5
2,507,851 + +0.8
2,507,862 + +0.8
2,507,897 + -0.2
2,507,907 - -1.7
2,508,020 + +0.4
2,508,020 + +0.3
2,508,126 + +0.2
2,508,207 + +0.2
2,508,299 + -0.4
2,508,510 + -2.3
2,508,510 + +0.5
2,508,511 - -0.5
2,508,511 - +0.3
2,508,539 + -0.4
2,508,539 + -1.2
2,508,540 - -1.1

Or see this region's nucleotide sequence