Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS06185

Experiment: R2A with Cobalt chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS06175 and RR42_RS06180 are separated by 83 nucleotidesRR42_RS06180 and RR42_RS06185 are separated by 123 nucleotidesRR42_RS06185 and RR42_RS06190 are separated by 126 nucleotides RR42_RS06175: RR42_RS06175 - enolase, at 1,356,578 to 1,357,867 _RS06175 RR42_RS06180: RR42_RS06180 - cell division protein FtsB, at 1,357,951 to 1,358,289 _RS06180 RR42_RS06185: RR42_RS06185 - hypothetical protein, at 1,358,413 to 1,358,814 _RS06185 RR42_RS06190: RR42_RS06190 - molecular chaperone Hsp33, at 1,358,941 to 1,359,969 _RS06190 Position (kb) 1358 1359Strain fitness (log2 ratio) -2 -1 0 1 2at 1357.853 kb on + strandat 1357.854 kb on - strandat 1358.287 kb on + strandat 1358.287 kb on + strandat 1358.405 kb on - strandat 1358.414 kb on + strandat 1358.414 kb on + strandat 1358.414 kb on + strandat 1358.424 kb on - strandat 1358.514 kb on - strand, within RR42_RS06185at 1358.526 kb on + strand, within RR42_RS06185at 1358.527 kb on - strand, within RR42_RS06185at 1358.543 kb on + strand, within RR42_RS06185at 1358.543 kb on + strand, within RR42_RS06185at 1358.543 kb on + strand, within RR42_RS06185at 1358.543 kb on + strand, within RR42_RS06185at 1358.543 kb on + strand, within RR42_RS06185at 1358.544 kb on - strand, within RR42_RS06185at 1358.544 kb on - strand, within RR42_RS06185at 1358.544 kb on - strand, within RR42_RS06185at 1358.544 kb on - strand, within RR42_RS06185at 1358.544 kb on - strand, within RR42_RS06185at 1358.544 kb on - strand, within RR42_RS06185at 1358.546 kb on + strand, within RR42_RS06185at 1358.546 kb on + strand, within RR42_RS06185at 1358.546 kb on + strand, within RR42_RS06185at 1358.547 kb on - strand, within RR42_RS06185at 1358.547 kb on - strand, within RR42_RS06185at 1358.547 kb on - strand, within RR42_RS06185at 1358.547 kb on - strand, within RR42_RS06185at 1358.547 kb on - strand, within RR42_RS06185at 1358.547 kb on - strand, within RR42_RS06185at 1358.547 kb on - strand, within RR42_RS06185at 1358.614 kb on + strand, within RR42_RS06185at 1358.615 kb on - strand, within RR42_RS06185at 1359.029 kb on + strandat 1359.226 kb on + strand, within RR42_RS06190at 1359.226 kb on + strand, within RR42_RS06190at 1359.489 kb on + strand, within RR42_RS06190at 1359.489 kb on + strand, within RR42_RS06190at 1359.489 kb on + strand, within RR42_RS06190at 1359.489 kb on + strand, within RR42_RS06190at 1359.490 kb on - strand, within RR42_RS06190at 1359.490 kb on - strand, within RR42_RS06190at 1359.490 kb on - strand, within RR42_RS06190at 1359.490 kb on - strand, within RR42_RS06190at 1359.490 kb on - strand, within RR42_RS06190at 1359.491 kb on + strand, within RR42_RS06190at 1359.491 kb on + strand, within RR42_RS06190at 1359.491 kb on + strand, within RR42_RS06190at 1359.491 kb on + strand, within RR42_RS06190at 1359.491 kb on + strand, within RR42_RS06190at 1359.492 kb on - strand, within RR42_RS06190at 1359.492 kb on - strand, within RR42_RS06190at 1359.492 kb on - strand, within RR42_RS06190at 1359.492 kb on - strand, within RR42_RS06190at 1359.492 kb on - strand, within RR42_RS06190at 1359.492 kb on - strand, within RR42_RS06190

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Cobalt chloride 0.5 mM
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1,357,853 + +0.4
1,357,854 - -1.2
1,358,287 + +0.3
1,358,287 + -0.8
1,358,405 - -0.8
1,358,414 + +0.4
1,358,414 + -0.2
1,358,414 + -0.4
1,358,424 - -0.1
1,358,514 - RR42_RS06185 0.25 +0.1
1,358,526 + RR42_RS06185 0.28 +0.4
1,358,527 - RR42_RS06185 0.28 +0.4
1,358,543 + RR42_RS06185 0.32 +0.3
1,358,543 + RR42_RS06185 0.32 -0.2
1,358,543 + RR42_RS06185 0.32 -1.8
1,358,543 + RR42_RS06185 0.32 +0.6
1,358,543 + RR42_RS06185 0.32 -1.1
1,358,544 - RR42_RS06185 0.33 -0.7
1,358,544 - RR42_RS06185 0.33 -0.5
1,358,544 - RR42_RS06185 0.33 +0.6
1,358,544 - RR42_RS06185 0.33 -0.1
1,358,544 - RR42_RS06185 0.33 -0.6
1,358,544 - RR42_RS06185 0.33 -0.9
1,358,546 + RR42_RS06185 0.33 +0.1
1,358,546 + RR42_RS06185 0.33 -2.0
1,358,546 + RR42_RS06185 0.33 +1.7
1,358,547 - RR42_RS06185 0.33 -0.1
1,358,547 - RR42_RS06185 0.33 +1.1
1,358,547 - RR42_RS06185 0.33 -0.3
1,358,547 - RR42_RS06185 0.33 -0.1
1,358,547 - RR42_RS06185 0.33 -0.8
1,358,547 - RR42_RS06185 0.33 +0.1
1,358,547 - RR42_RS06185 0.33 -0.4
1,358,614 + RR42_RS06185 0.50 -0.5
1,358,615 - RR42_RS06185 0.50 -0.7
1,359,029 + -0.3
1,359,226 + RR42_RS06190 0.28 +0.5
1,359,226 + RR42_RS06190 0.28 -0.2
1,359,489 + RR42_RS06190 0.53 -0.2
1,359,489 + RR42_RS06190 0.53 -0.1
1,359,489 + RR42_RS06190 0.53 -0.3
1,359,489 + RR42_RS06190 0.53 -0.1
1,359,490 - RR42_RS06190 0.53 -0.2
1,359,490 - RR42_RS06190 0.53 +0.4
1,359,490 - RR42_RS06190 0.53 -0.1
1,359,490 - RR42_RS06190 0.53 -0.9
1,359,490 - RR42_RS06190 0.53 -0.9
1,359,491 + RR42_RS06190 0.53 +2.2
1,359,491 + RR42_RS06190 0.53 +1.9
1,359,491 + RR42_RS06190 0.53 +0.8
1,359,491 + RR42_RS06190 0.53 -1.5
1,359,491 + RR42_RS06190 0.53 -1.8
1,359,492 - RR42_RS06190 0.54 +0.4
1,359,492 - RR42_RS06190 0.54 +1.9
1,359,492 - RR42_RS06190 0.54 -1.0
1,359,492 - RR42_RS06190 0.54 +0.5
1,359,492 - RR42_RS06190 0.54 -0.7
1,359,492 - RR42_RS06190 0.54 -1.1

Or see this region's nucleotide sequence