Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS05275

Experiment: R2A with Cobalt chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS05265 and RR42_RS05270 are separated by 313 nucleotidesRR42_RS05270 and RR42_RS05275 are separated by 31 nucleotidesRR42_RS05275 and RR42_RS05280 are separated by 239 nucleotidesRR42_RS05280 and RR42_RS05285 are separated by 44 nucleotides RR42_RS05265: RR42_RS05265 - GntR family transcriptional regulator, at 1,162,461 to 1,163,204 _RS05265 RR42_RS05270: RR42_RS05270 - 5-hydroxyisourate hydrolase, at 1,163,518 to 1,163,871 _RS05270 RR42_RS05275: RR42_RS05275 - membrane protein, at 1,163,903 to 1,165,108 _RS05275 RR42_RS05280: RR42_RS05280 - cytochrome C, at 1,165,348 to 1,165,965 _RS05280 RR42_RS05285: RR42_RS05285 - quinonprotein alcohol dehydrogenase, at 1,166,010 to 1,167,758 _RS05285 Position (kb) 1163 1164 1165 1166Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1163.095 kb on + strand, within RR42_RS05265at 1163.095 kb on + strand, within RR42_RS05265at 1163.095 kb on + strand, within RR42_RS05265at 1163.096 kb on - strand, within RR42_RS05265at 1163.107 kb on + strand, within RR42_RS05265at 1163.107 kb on + strand, within RR42_RS05265at 1163.107 kb on + strand, within RR42_RS05265at 1163.108 kb on - strand, within RR42_RS05265at 1163.108 kb on - strand, within RR42_RS05265at 1163.108 kb on - strand, within RR42_RS05265at 1163.108 kb on - strand, within RR42_RS05265at 1163.218 kb on + strandat 1163.219 kb on - strandat 1163.313 kb on + strandat 1163.431 kb on + strandat 1163.432 kb on - strandat 1163.432 kb on - strandat 1163.467 kb on + strandat 1163.468 kb on - strandat 1163.540 kb on + strandat 1163.540 kb on + strandat 1163.698 kb on + strand, within RR42_RS05270at 1163.699 kb on - strand, within RR42_RS05270at 1163.699 kb on - strand, within RR42_RS05270at 1163.699 kb on - strand, within RR42_RS05270at 1163.815 kb on + strand, within RR42_RS05270at 1163.857 kb on + strandat 1163.858 kb on - strandat 1163.858 kb on - strandat 1163.869 kb on + strandat 1163.869 kb on + strandat 1163.870 kb on - strandat 1163.912 kb on + strandat 1163.912 kb on + strandat 1163.912 kb on + strandat 1163.913 kb on - strandat 1163.913 kb on - strandat 1163.915 kb on - strandat 1163.915 kb on - strandat 1163.915 kb on - strandat 1163.991 kb on - strandat 1164.092 kb on + strand, within RR42_RS05275at 1164.107 kb on + strand, within RR42_RS05275at 1164.153 kb on - strand, within RR42_RS05275at 1164.164 kb on + strand, within RR42_RS05275at 1164.164 kb on + strand, within RR42_RS05275at 1164.165 kb on - strand, within RR42_RS05275at 1164.165 kb on - strand, within RR42_RS05275at 1164.206 kb on + strand, within RR42_RS05275at 1164.206 kb on + strand, within RR42_RS05275at 1164.206 kb on + strand, within RR42_RS05275at 1164.207 kb on - strand, within RR42_RS05275at 1164.290 kb on + strand, within RR42_RS05275at 1164.291 kb on - strand, within RR42_RS05275at 1164.314 kb on + strand, within RR42_RS05275at 1164.315 kb on - strand, within RR42_RS05275at 1164.315 kb on - strand, within RR42_RS05275at 1164.377 kb on + strand, within RR42_RS05275at 1164.377 kb on + strand, within RR42_RS05275at 1164.377 kb on + strand, within RR42_RS05275at 1164.378 kb on - strand, within RR42_RS05275at 1164.378 kb on - strand, within RR42_RS05275at 1164.590 kb on + strand, within RR42_RS05275at 1164.591 kb on - strand, within RR42_RS05275at 1164.650 kb on + strand, within RR42_RS05275at 1164.650 kb on + strand, within RR42_RS05275at 1164.650 kb on + strand, within RR42_RS05275at 1164.656 kb on + strand, within RR42_RS05275at 1164.656 kb on + strand, within RR42_RS05275at 1164.656 kb on + strand, within RR42_RS05275at 1164.657 kb on - strand, within RR42_RS05275at 1164.657 kb on - strand, within RR42_RS05275at 1164.657 kb on - strand, within RR42_RS05275at 1164.859 kb on + strand, within RR42_RS05275at 1164.860 kb on - strand, within RR42_RS05275at 1164.867 kb on + strand, within RR42_RS05275at 1164.944 kb on - strand, within RR42_RS05275at 1164.992 kb on + strandat 1164.992 kb on + strandat 1164.992 kb on + strandat 1164.993 kb on - strandat 1164.993 kb on - strandat 1165.183 kb on - strandat 1165.365 kb on + strandat 1165.365 kb on + strandat 1165.366 kb on - strandat 1165.366 kb on - strandat 1165.366 kb on - strandat 1165.367 kb on + strandat 1165.368 kb on - strandat 1165.368 kb on - strandat 1165.368 kb on - strandat 1165.368 kb on - strandat 1165.371 kb on + strandat 1165.371 kb on + strandat 1165.372 kb on - strandat 1165.412 kb on - strand, within RR42_RS05280at 1165.479 kb on + strand, within RR42_RS05280at 1165.479 kb on + strand, within RR42_RS05280at 1165.479 kb on + strand, within RR42_RS05280at 1165.479 kb on + strand, within RR42_RS05280at 1165.481 kb on + strand, within RR42_RS05280at 1165.481 kb on + strand, within RR42_RS05280at 1165.481 kb on + strand, within RR42_RS05280at 1165.482 kb on - strand, within RR42_RS05280at 1165.482 kb on - strand, within RR42_RS05280at 1165.482 kb on - strand, within RR42_RS05280at 1165.482 kb on - strand, within RR42_RS05280at 1165.482 kb on - strand, within RR42_RS05280at 1165.487 kb on + strand, within RR42_RS05280at 1165.751 kb on + strand, within RR42_RS05280at 1165.949 kb on + strandat 1165.950 kb on - strandat 1165.950 kb on - strandat 1165.984 kb on - strandat 1166.011 kb on + strandat 1166.089 kb on + strandat 1166.089 kb on + strandat 1166.089 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Cobalt chloride 0.5 mM
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1,163,095 + RR42_RS05265 0.85 -0.1
1,163,095 + RR42_RS05265 0.85 -1.1
1,163,095 + RR42_RS05265 0.85 -0.0
1,163,096 - RR42_RS05265 0.85 -0.7
1,163,107 + RR42_RS05265 0.87 +0.2
1,163,107 + RR42_RS05265 0.87 -2.1
1,163,107 + RR42_RS05265 0.87 -0.9
1,163,108 - RR42_RS05265 0.87 +0.3
1,163,108 - RR42_RS05265 0.87 -1.7
1,163,108 - RR42_RS05265 0.87 -0.0
1,163,108 - RR42_RS05265 0.87 +0.7
1,163,218 + -1.7
1,163,219 - -1.0
1,163,313 + -0.0
1,163,431 + +0.1
1,163,432 - +0.4
1,163,432 - -0.8
1,163,467 + -0.7
1,163,468 - +1.4
1,163,540 + +0.3
1,163,540 + -1.6
1,163,698 + RR42_RS05270 0.51 +0.3
1,163,699 - RR42_RS05270 0.51 -0.1
1,163,699 - RR42_RS05270 0.51 -0.8
1,163,699 - RR42_RS05270 0.51 -0.2
1,163,815 + RR42_RS05270 0.84 -0.1
1,163,857 + +0.1
1,163,858 - +2.0
1,163,858 - +0.6
1,163,869 + -1.9
1,163,869 + +1.7
1,163,870 - +0.1
1,163,912 + +0.4
1,163,912 + +0.4
1,163,912 + -0.2
1,163,913 - +0.0
1,163,913 - -3.2
1,163,915 - -0.7
1,163,915 - -0.4
1,163,915 - +1.7
1,163,991 - +0.8
1,164,092 + RR42_RS05275 0.16 +0.9
1,164,107 + RR42_RS05275 0.17 +0.4
1,164,153 - RR42_RS05275 0.21 +2.5
1,164,164 + RR42_RS05275 0.22 -1.9
1,164,164 + RR42_RS05275 0.22 +1.0
1,164,165 - RR42_RS05275 0.22 +0.4
1,164,165 - RR42_RS05275 0.22 -1.8
1,164,206 + RR42_RS05275 0.25 +0.0
1,164,206 + RR42_RS05275 0.25 -0.5
1,164,206 + RR42_RS05275 0.25 -1.3
1,164,207 - RR42_RS05275 0.25 -0.2
1,164,290 + RR42_RS05275 0.32 -0.6
1,164,291 - RR42_RS05275 0.32 +0.7
1,164,314 + RR42_RS05275 0.34 -0.9
1,164,315 - RR42_RS05275 0.34 -1.0
1,164,315 - RR42_RS05275 0.34 +0.2
1,164,377 + RR42_RS05275 0.39 -0.0
1,164,377 + RR42_RS05275 0.39 -0.0
1,164,377 + RR42_RS05275 0.39 +0.7
1,164,378 - RR42_RS05275 0.39 +1.0
1,164,378 - RR42_RS05275 0.39 +0.5
1,164,590 + RR42_RS05275 0.57 -0.3
1,164,591 - RR42_RS05275 0.57 -0.2
1,164,650 + RR42_RS05275 0.62 -1.7
1,164,650 + RR42_RS05275 0.62 +0.9
1,164,650 + RR42_RS05275 0.62 -0.5
1,164,656 + RR42_RS05275 0.62 -1.8
1,164,656 + RR42_RS05275 0.62 -1.5
1,164,656 + RR42_RS05275 0.62 +0.2
1,164,657 - RR42_RS05275 0.63 -0.3
1,164,657 - RR42_RS05275 0.63 -0.3
1,164,657 - RR42_RS05275 0.63 +2.5
1,164,859 + RR42_RS05275 0.79 +0.2
1,164,860 - RR42_RS05275 0.79 -0.6
1,164,867 + RR42_RS05275 0.80 -0.1
1,164,944 - RR42_RS05275 0.86 -0.8
1,164,992 + -0.3
1,164,992 + -0.6
1,164,992 + +1.0
1,164,993 - -0.0
1,164,993 - -0.5
1,165,183 - +0.2
1,165,365 + +0.2
1,165,365 + -0.5
1,165,366 - -0.4
1,165,366 - -0.0
1,165,366 - -1.2
1,165,367 + -1.0
1,165,368 - +0.2
1,165,368 - -1.2
1,165,368 - +1.8
1,165,368 - -0.5
1,165,371 + +0.5
1,165,371 + -0.2
1,165,372 - -0.3
1,165,412 - RR42_RS05280 0.10 +1.0
1,165,479 + RR42_RS05280 0.21 +0.2
1,165,479 + RR42_RS05280 0.21 +1.0
1,165,479 + RR42_RS05280 0.21 +0.2
1,165,479 + RR42_RS05280 0.21 -0.5
1,165,481 + RR42_RS05280 0.22 +0.3
1,165,481 + RR42_RS05280 0.22 +0.1
1,165,481 + RR42_RS05280 0.22 -1.0
1,165,482 - RR42_RS05280 0.22 -0.7
1,165,482 - RR42_RS05280 0.22 -0.8
1,165,482 - RR42_RS05280 0.22 -0.1
1,165,482 - RR42_RS05280 0.22 -0.5
1,165,482 - RR42_RS05280 0.22 -1.6
1,165,487 + RR42_RS05280 0.22 -1.3
1,165,751 + RR42_RS05280 0.65 -2.3
1,165,949 + -1.0
1,165,950 - -0.2
1,165,950 - +1.4
1,165,984 - +0.6
1,166,011 + -0.6
1,166,089 + +0.2
1,166,089 + +0.4
1,166,089 + -0.7

Or see this region's nucleotide sequence