Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS01450

Experiment: R2A with Cobalt chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS01445 and RR42_RS01450 are separated by 27 nucleotidesRR42_RS01450 and RR42_RS01455 are separated by 257 nucleotides RR42_RS01445: RR42_RS01445 - tRNA 2-thiocytidine biosynthesis protein TtcA, at 325,061 to 326,002 _RS01445 RR42_RS01450: RR42_RS01450 - hypothetical protein, at 326,030 to 326,896 _RS01450 RR42_RS01455: RR42_RS01455 - bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase, at 327,154 to 328,515 _RS01455 Position (kb) 326 327Strain fitness (log2 ratio) -2 -1 0 1 2at 325.106 kb on + strandat 325.106 kb on + strandat 325.107 kb on - strandat 325.107 kb on - strandat 325.107 kb on - strandat 325.202 kb on + strand, within RR42_RS01445at 325.202 kb on + strand, within RR42_RS01445at 325.202 kb on + strand, within RR42_RS01445at 325.203 kb on - strand, within RR42_RS01445at 325.203 kb on - strand, within RR42_RS01445at 325.203 kb on - strand, within RR42_RS01445at 325.203 kb on - strand, within RR42_RS01445at 325.203 kb on - strand, within RR42_RS01445at 325.343 kb on + strand, within RR42_RS01445at 325.343 kb on + strand, within RR42_RS01445at 325.343 kb on + strand, within RR42_RS01445at 325.343 kb on + strand, within RR42_RS01445at 325.343 kb on + strand, within RR42_RS01445at 325.344 kb on - strand, within RR42_RS01445at 325.344 kb on - strand, within RR42_RS01445at 325.344 kb on - strand, within RR42_RS01445at 325.344 kb on - strand, within RR42_RS01445at 325.344 kb on - strand, within RR42_RS01445at 325.344 kb on - strand, within RR42_RS01445at 325.344 kb on - strand, within RR42_RS01445at 325.344 kb on - strand, within RR42_RS01445at 325.368 kb on - strand, within RR42_RS01445at 325.368 kb on - strand, within RR42_RS01445at 325.445 kb on + strand, within RR42_RS01445at 325.446 kb on - strand, within RR42_RS01445at 325.446 kb on - strand, within RR42_RS01445at 325.613 kb on + strand, within RR42_RS01445at 325.641 kb on - strand, within RR42_RS01445at 325.768 kb on + strand, within RR42_RS01445at 325.768 kb on + strand, within RR42_RS01445at 325.768 kb on + strand, within RR42_RS01445at 325.768 kb on + strand, within RR42_RS01445at 325.769 kb on - strand, within RR42_RS01445at 326.001 kb on - strandat 326.257 kb on - strand, within RR42_RS01450at 326.451 kb on + strand, within RR42_RS01450at 326.520 kb on + strand, within RR42_RS01450at 326.690 kb on + strand, within RR42_RS01450at 326.814 kb on + strandat 326.814 kb on + strandat 326.814 kb on + strandat 326.814 kb on + strandat 326.814 kb on + strandat 326.814 kb on + strandat 326.814 kb on + strandat 326.814 kb on + strandat 326.815 kb on - strandat 326.815 kb on - strandat 326.815 kb on - strandat 326.861 kb on + strandat 326.862 kb on - strandat 326.862 kb on - strandat 326.862 kb on - strandat 326.862 kb on - strandat 326.862 kb on - strandat 326.862 kb on - strandat 326.867 kb on + strandat 326.868 kb on + strandat 326.868 kb on - strandat 326.977 kb on + strandat 326.977 kb on + strandat 326.977 kb on + strandat 326.977 kb on + strandat 326.977 kb on + strandat 326.977 kb on + strandat 326.978 kb on - strandat 326.978 kb on - strandat 326.978 kb on - strandat 326.978 kb on - strandat 326.978 kb on - strandat 326.978 kb on - strandat 327.117 kb on + strandat 327.141 kb on + strandat 327.141 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Cobalt chloride 0.5 mM
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325,106 + -0.0
325,106 + -0.4
325,107 - +1.0
325,107 - -1.4
325,107 - +0.1
325,202 + RR42_RS01445 0.15 +0.1
325,202 + RR42_RS01445 0.15 -1.3
325,202 + RR42_RS01445 0.15 -1.3
325,203 - RR42_RS01445 0.15 +0.5
325,203 - RR42_RS01445 0.15 -2.7
325,203 - RR42_RS01445 0.15 -2.5
325,203 - RR42_RS01445 0.15 -1.3
325,203 - RR42_RS01445 0.15 +0.1
325,343 + RR42_RS01445 0.30 -0.2
325,343 + RR42_RS01445 0.30 -1.6
325,343 + RR42_RS01445 0.30 -1.7
325,343 + RR42_RS01445 0.30 +0.6
325,343 + RR42_RS01445 0.30 -1.0
325,344 - RR42_RS01445 0.30 +0.6
325,344 - RR42_RS01445 0.30 -1.7
325,344 - RR42_RS01445 0.30 +0.0
325,344 - RR42_RS01445 0.30 +0.9
325,344 - RR42_RS01445 0.30 -0.1
325,344 - RR42_RS01445 0.30 -2.0
325,344 - RR42_RS01445 0.30 -0.4
325,344 - RR42_RS01445 0.30 -1.5
325,368 - RR42_RS01445 0.33 -1.9
325,368 - RR42_RS01445 0.33 -0.8
325,445 + RR42_RS01445 0.41 +0.5
325,446 - RR42_RS01445 0.41 -0.6
325,446 - RR42_RS01445 0.41 -1.0
325,613 + RR42_RS01445 0.59 -1.8
325,641 - RR42_RS01445 0.62 +0.6
325,768 + RR42_RS01445 0.75 +0.7
325,768 + RR42_RS01445 0.75 -1.2
325,768 + RR42_RS01445 0.75 -0.8
325,768 + RR42_RS01445 0.75 -1.3
325,769 - RR42_RS01445 0.75 -0.4
326,001 - -0.6
326,257 - RR42_RS01450 0.26 -0.6
326,451 + RR42_RS01450 0.49 +0.8
326,520 + RR42_RS01450 0.57 -0.8
326,690 + RR42_RS01450 0.76 +0.0
326,814 + -0.8
326,814 + +0.1
326,814 + -0.5
326,814 + -0.3
326,814 + +0.4
326,814 + +0.8
326,814 + -2.2
326,814 + +0.2
326,815 - +0.8
326,815 - +0.5
326,815 - +0.2
326,861 + +0.0
326,862 - -0.3
326,862 - +1.9
326,862 - -0.7
326,862 - +0.2
326,862 - +0.3
326,862 - +0.1
326,867 + +0.2
326,868 + -0.7
326,868 - -0.5
326,977 + -0.7
326,977 + +0.1
326,977 + -0.8
326,977 + +0.4
326,977 + +1.2
326,977 + +0.2
326,978 - -1.9
326,978 - -0.4
326,978 - -1.8
326,978 - +0.2
326,978 - -0.8
326,978 - +1.1
327,117 + +0.0
327,141 + +0.8
327,141 + -0.0

Or see this region's nucleotide sequence