Experiment: R2A with Cobalt chloride 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS01280 and RR42_RS01285 are separated by 116 nucleotides RR42_RS01285 and RR42_RS01290 are separated by 461 nucleotides
RR42_RS01280: RR42_RS01280 - GMC family oxidoreductase, at 289,953 to 291,632
_RS01280
RR42_RS01285: RR42_RS01285 - acyl-CoA dehydrogenase, at 291,749 to 293,410
_RS01285
RR42_RS01290: RR42_RS01290 - thiamine biosynthesis protein ThiC, at 293,872 to 295,758
_RS01290
Position (kb) 291
292
293
294 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 290.819 kb on - strand, within RR42_RS01280 at 290.823 kb on - strand, within RR42_RS01280 at 290.959 kb on + strand, within RR42_RS01280 at 291.095 kb on + strand, within RR42_RS01280 at 291.095 kb on + strand, within RR42_RS01280 at 291.096 kb on - strand, within RR42_RS01280 at 291.096 kb on - strand, within RR42_RS01280 at 291.124 kb on - strand, within RR42_RS01280 at 291.169 kb on + strand, within RR42_RS01280 at 291.170 kb on - strand, within RR42_RS01280 at 291.324 kb on + strand, within RR42_RS01280 at 291.324 kb on + strand, within RR42_RS01280 at 291.325 kb on - strand, within RR42_RS01280 at 291.395 kb on + strand, within RR42_RS01280 at 291.402 kb on + strand, within RR42_RS01280 at 291.402 kb on + strand, within RR42_RS01280 at 291.403 kb on - strand, within RR42_RS01280 at 291.403 kb on - strand, within RR42_RS01280 at 291.403 kb on - strand, within RR42_RS01280 at 291.403 kb on - strand, within RR42_RS01280 at 291.403 kb on - strand, within RR42_RS01280 at 291.403 kb on - strand, within RR42_RS01280 at 291.403 kb on - strand, within RR42_RS01280 at 292.147 kb on - strand, within RR42_RS01285 at 292.176 kb on + strand, within RR42_RS01285 at 292.177 kb on - strand, within RR42_RS01285 at 292.503 kb on + strand, within RR42_RS01285 at 292.503 kb on + strand, within RR42_RS01285 at 292.504 kb on - strand, within RR42_RS01285 at 292.504 kb on - strand, within RR42_RS01285 at 292.780 kb on - strand, within RR42_RS01285 at 293.197 kb on + strand, within RR42_RS01285 at 293.197 kb on + strand, within RR42_RS01285 at 293.197 kb on + strand, within RR42_RS01285 at 293.198 kb on - strand, within RR42_RS01285 at 293.198 kb on - strand, within RR42_RS01285 at 293.277 kb on - strand at 293.485 kb on + strand at 293.485 kb on + strand at 293.486 kb on - strand at 293.527 kb on - strand at 293.527 kb on - strand at 293.593 kb on + strand at 293.594 kb on - strand at 293.594 kb on - strand at 293.594 kb on - strand at 294.340 kb on + strand, within RR42_RS01290 at 294.340 kb on + strand, within RR42_RS01290 at 294.394 kb on + strand, within RR42_RS01290
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Cobalt chloride 0.5 mM remove 290,819 - RR42_RS01280 0.52 -0.4 290,823 - RR42_RS01280 0.52 -0.7 290,959 + RR42_RS01280 0.60 +0.5 291,095 + RR42_RS01280 0.68 -0.7 291,095 + RR42_RS01280 0.68 +0.9 291,096 - RR42_RS01280 0.68 +1.2 291,096 - RR42_RS01280 0.68 +0.4 291,124 - RR42_RS01280 0.70 -0.2 291,169 + RR42_RS01280 0.72 -1.2 291,170 - RR42_RS01280 0.72 -1.0 291,324 + RR42_RS01280 0.82 +0.2 291,324 + RR42_RS01280 0.82 -0.7 291,325 - RR42_RS01280 0.82 +0.5 291,395 + RR42_RS01280 0.86 -0.0 291,402 + RR42_RS01280 0.86 +0.1 291,402 + RR42_RS01280 0.86 -0.8 291,403 - RR42_RS01280 0.86 +0.1 291,403 - RR42_RS01280 0.86 +0.7 291,403 - RR42_RS01280 0.86 -0.2 291,403 - RR42_RS01280 0.86 +1.2 291,403 - RR42_RS01280 0.86 -0.7 291,403 - RR42_RS01280 0.86 +1.1 291,403 - RR42_RS01280 0.86 +0.0 292,147 - RR42_RS01285 0.24 +2.8 292,176 + RR42_RS01285 0.26 -0.4 292,177 - RR42_RS01285 0.26 +0.1 292,503 + RR42_RS01285 0.45 -1.2 292,503 + RR42_RS01285 0.45 -1.9 292,504 - RR42_RS01285 0.45 -0.6 292,504 - RR42_RS01285 0.45 +0.2 292,780 - RR42_RS01285 0.62 -1.6 293,197 + RR42_RS01285 0.87 -1.0 293,197 + RR42_RS01285 0.87 -0.0 293,197 + RR42_RS01285 0.87 +0.1 293,198 - RR42_RS01285 0.87 -0.2 293,198 - RR42_RS01285 0.87 +0.4 293,277 - +1.1 293,485 + +1.1 293,485 + +0.8 293,486 - +1.9 293,527 - -0.5 293,527 - -0.1 293,593 + +1.0 293,594 - -1.1 293,594 - +0.5 293,594 - +0.0 294,340 + RR42_RS01290 0.25 -0.5 294,340 + RR42_RS01290 0.25 +0.0 294,394 + RR42_RS01290 0.28 +1.0
Or see this region's nucleotide sequence