Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS01070

Experiment: R2A with Cobalt chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS01065 and RR42_RS01070 are separated by 79 nucleotidesRR42_RS01070 and RR42_RS01075 are separated by 294 nucleotides RR42_RS01065: RR42_RS01065 - ATP-dependent protease ATP-binding subunit HslU, at 250,274 to 251,605 _RS01065 RR42_RS01070: RR42_RS01070 - nuclear export factor GLE1, at 251,685 to 252,197 _RS01070 RR42_RS01075: RR42_RS01075 - hypothetical protein, at 252,492 to 253,073 _RS01075 Position (kb) 251 252 253Strain fitness (log2 ratio) -2 -1 0 1 2 3at 251.153 kb on + strand, within RR42_RS01065at 251.153 kb on + strand, within RR42_RS01065at 251.154 kb on - strand, within RR42_RS01065at 251.154 kb on - strand, within RR42_RS01065at 251.154 kb on - strand, within RR42_RS01065at 251.336 kb on + strand, within RR42_RS01065at 251.336 kb on + strand, within RR42_RS01065at 251.337 kb on - strand, within RR42_RS01065at 251.337 kb on - strand, within RR42_RS01065at 251.459 kb on + strand, within RR42_RS01065at 251.459 kb on + strand, within RR42_RS01065at 251.459 kb on + strand, within RR42_RS01065at 251.460 kb on - strand, within RR42_RS01065at 251.460 kb on - strand, within RR42_RS01065at 251.543 kb on + strandat 251.543 kb on + strandat 251.544 kb on - strandat 251.594 kb on + strandat 251.594 kb on + strandat 251.603 kb on + strandat 251.603 kb on + strandat 251.833 kb on + strand, within RR42_RS01070at 251.833 kb on + strand, within RR42_RS01070at 251.834 kb on - strand, within RR42_RS01070at 251.962 kb on + strand, within RR42_RS01070at 251.962 kb on + strand, within RR42_RS01070at 251.962 kb on + strand, within RR42_RS01070at 251.963 kb on - strand, within RR42_RS01070at 252.115 kb on + strand, within RR42_RS01070at 252.115 kb on + strand, within RR42_RS01070at 252.115 kb on + strand, within RR42_RS01070at 252.266 kb on - strandat 252.393 kb on - strandat 252.393 kb on - strandat 252.399 kb on + strandat 252.399 kb on + strandat 252.400 kb on - strandat 252.403 kb on + strandat 252.403 kb on + strandat 252.403 kb on + strandat 252.403 kb on + strandat 252.403 kb on + strandat 252.403 kb on + strandat 252.403 kb on + strandat 252.403 kb on + strandat 252.403 kb on + strandat 252.404 kb on - strandat 252.404 kb on - strandat 252.404 kb on - strandat 252.404 kb on - strandat 252.404 kb on - strandat 252.404 kb on - strandat 252.404 kb on - strandat 252.404 kb on - strandat 252.594 kb on + strand, within RR42_RS01075at 252.595 kb on - strand, within RR42_RS01075at 252.627 kb on + strand, within RR42_RS01075at 252.627 kb on + strand, within RR42_RS01075at 252.628 kb on - strand, within RR42_RS01075at 252.628 kb on - strand, within RR42_RS01075at 252.628 kb on - strand, within RR42_RS01075at 252.628 kb on - strand, within RR42_RS01075at 252.795 kb on + strand, within RR42_RS01075at 252.796 kb on - strand, within RR42_RS01075at 252.853 kb on + strand, within RR42_RS01075at 252.853 kb on + strand, within RR42_RS01075at 252.854 kb on - strand, within RR42_RS01075at 252.985 kb on - strand, within RR42_RS01075at 252.985 kb on - strand, within RR42_RS01075at 252.985 kb on - strand, within RR42_RS01075at 253.034 kb on + strandat 253.034 kb on + strandat 253.034 kb on + strandat 253.035 kb on - strandat 253.035 kb on - strandat 253.062 kb on + strandat 253.071 kb on + strandat 253.071 kb on + strandat 253.071 kb on + strandat 253.071 kb on + strandat 253.071 kb on + strandat 253.072 kb on - strandat 253.072 kb on - strandat 253.158 kb on + strandat 253.159 kb on - strandat 253.172 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Cobalt chloride 0.5 mM
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251,153 + RR42_RS01065 0.66 +0.4
251,153 + RR42_RS01065 0.66 -0.5
251,154 - RR42_RS01065 0.66 +0.4
251,154 - RR42_RS01065 0.66 +1.2
251,154 - RR42_RS01065 0.66 +0.5
251,336 + RR42_RS01065 0.80 -0.2
251,336 + RR42_RS01065 0.80 -2.5
251,337 - RR42_RS01065 0.80 -1.8
251,337 - RR42_RS01065 0.80 +0.1
251,459 + RR42_RS01065 0.89 +0.6
251,459 + RR42_RS01065 0.89 +0.2
251,459 + RR42_RS01065 0.89 +0.2
251,460 - RR42_RS01065 0.89 -0.9
251,460 - RR42_RS01065 0.89 -0.3
251,543 + +0.5
251,543 + +2.7
251,544 - +0.6
251,594 + +0.6
251,594 + -0.5
251,603 + +0.2
251,603 + -1.5
251,833 + RR42_RS01070 0.29 +0.3
251,833 + RR42_RS01070 0.29 -1.8
251,834 - RR42_RS01070 0.29 -1.1
251,962 + RR42_RS01070 0.54 +0.6
251,962 + RR42_RS01070 0.54 -1.1
251,962 + RR42_RS01070 0.54 -0.1
251,963 - RR42_RS01070 0.54 -0.3
252,115 + RR42_RS01070 0.84 -0.1
252,115 + RR42_RS01070 0.84 -0.6
252,115 + RR42_RS01070 0.84 -0.3
252,266 - +0.4
252,393 - +2.2
252,393 - +0.9
252,399 + +0.8
252,399 + -0.9
252,400 - -1.6
252,403 + +0.2
252,403 + -1.3
252,403 + +0.9
252,403 + -0.5
252,403 + +0.4
252,403 + +0.5
252,403 + -1.1
252,403 + +0.4
252,403 + -2.1
252,404 - -0.1
252,404 - -0.2
252,404 - -0.6
252,404 - -0.0
252,404 - +0.8
252,404 - -0.2
252,404 - +0.2
252,404 - +0.7
252,594 + RR42_RS01075 0.18 -0.8
252,595 - RR42_RS01075 0.18 +0.4
252,627 + RR42_RS01075 0.23 +0.0
252,627 + RR42_RS01075 0.23 +0.1
252,628 - RR42_RS01075 0.23 -0.1
252,628 - RR42_RS01075 0.23 -0.2
252,628 - RR42_RS01075 0.23 -1.3
252,628 - RR42_RS01075 0.23 +0.6
252,795 + RR42_RS01075 0.52 -0.4
252,796 - RR42_RS01075 0.52 -1.7
252,853 + RR42_RS01075 0.62 +0.6
252,853 + RR42_RS01075 0.62 +0.4
252,854 - RR42_RS01075 0.62 +2.4
252,985 - RR42_RS01075 0.85 -1.3
252,985 - RR42_RS01075 0.85 +3.2
252,985 - RR42_RS01075 0.85 -0.5
253,034 + +0.6
253,034 + +1.9
253,034 + -0.8
253,035 - +0.3
253,035 - +2.8
253,062 + -1.3
253,071 + -1.0
253,071 + +0.9
253,071 + +0.6
253,071 + +0.3
253,071 + -1.3
253,072 - -0.6
253,072 - +0.2
253,158 + +1.1
253,159 - +0.9
253,172 - +1.1

Or see this region's nucleotide sequence