Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS00990

Experiment: R2A with Cobalt chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS00980 and RR42_RS00985 are separated by 58 nucleotidesRR42_RS00985 and RR42_RS00990 are separated by 10 nucleotidesRR42_RS00990 and RR42_RS00995 are separated by 158 nucleotides RR42_RS00980: RR42_RS00980 - hypothetical protein, at 231,227 to 231,823 _RS00980 RR42_RS00985: RR42_RS00985 - acetyltransferase, at 231,882 to 232,496 _RS00985 RR42_RS00990: RR42_RS00990 - GntR family transcriptional regulator, at 232,507 to 233,244 _RS00990 RR42_RS00995: RR42_RS00995 - sodium:cation symporter, at 233,403 to 234,932 _RS00995 Position (kb) 232 233 234Strain fitness (log2 ratio) -2 -1 0 1 2 3at 231.979 kb on + strand, within RR42_RS00985at 232.011 kb on + strand, within RR42_RS00985at 232.011 kb on + strand, within RR42_RS00985at 232.011 kb on + strand, within RR42_RS00985at 232.011 kb on + strand, within RR42_RS00985at 232.013 kb on + strand, within RR42_RS00985at 232.014 kb on - strand, within RR42_RS00985at 232.014 kb on - strand, within RR42_RS00985at 232.077 kb on + strand, within RR42_RS00985at 232.078 kb on - strand, within RR42_RS00985at 232.078 kb on - strand, within RR42_RS00985at 232.091 kb on - strand, within RR42_RS00985at 232.116 kb on + strand, within RR42_RS00985at 232.116 kb on + strand, within RR42_RS00985at 232.116 kb on + strand, within RR42_RS00985at 232.116 kb on + strand, within RR42_RS00985at 232.117 kb on - strand, within RR42_RS00985at 232.152 kb on + strand, within RR42_RS00985at 232.153 kb on - strand, within RR42_RS00985at 232.239 kb on + strand, within RR42_RS00985at 232.239 kb on + strand, within RR42_RS00985at 232.239 kb on + strand, within RR42_RS00985at 232.239 kb on + strand, within RR42_RS00985at 232.240 kb on - strand, within RR42_RS00985at 232.240 kb on - strand, within RR42_RS00985at 232.295 kb on + strand, within RR42_RS00985at 232.295 kb on + strand, within RR42_RS00985at 232.295 kb on + strand, within RR42_RS00985at 232.295 kb on + strand, within RR42_RS00985at 232.296 kb on - strand, within RR42_RS00985at 232.296 kb on - strand, within RR42_RS00985at 232.296 kb on - strand, within RR42_RS00985at 232.296 kb on - strand, within RR42_RS00985at 232.395 kb on + strand, within RR42_RS00985at 232.396 kb on - strand, within RR42_RS00985at 232.396 kb on - strand, within RR42_RS00985at 232.416 kb on + strand, within RR42_RS00985at 232.442 kb on + strandat 232.442 kb on + strandat 232.443 kb on - strandat 232.443 kb on - strandat 232.443 kb on - strandat 232.508 kb on + strandat 232.508 kb on + strandat 232.537 kb on - strandat 232.553 kb on + strandat 232.554 kb on - strandat 232.751 kb on + strand, within RR42_RS00990at 232.751 kb on + strand, within RR42_RS00990at 232.751 kb on + strand, within RR42_RS00990at 232.751 kb on + strand, within RR42_RS00990at 232.890 kb on + strand, within RR42_RS00990at 232.977 kb on - strand, within RR42_RS00990at 232.992 kb on + strand, within RR42_RS00990at 232.993 kb on - strand, within RR42_RS00990at 232.993 kb on - strand, within RR42_RS00990at 232.993 kb on - strand, within RR42_RS00990at 233.247 kb on - strandat 233.452 kb on + strandat 233.457 kb on + strandat 233.457 kb on + strandat 233.458 kb on - strandat 233.458 kb on - strandat 233.458 kb on - strandat 233.458 kb on - strandat 233.608 kb on + strand, within RR42_RS00995at 233.850 kb on - strand, within RR42_RS00995at 233.933 kb on + strand, within RR42_RS00995at 233.934 kb on - strand, within RR42_RS00995at 234.030 kb on + strand, within RR42_RS00995at 234.030 kb on + strand, within RR42_RS00995at 234.031 kb on - strand, within RR42_RS00995at 234.080 kb on + strand, within RR42_RS00995at 234.080 kb on + strand, within RR42_RS00995at 234.081 kb on - strand, within RR42_RS00995at 234.130 kb on - strand, within RR42_RS00995at 234.130 kb on - strand, within RR42_RS00995at 234.159 kb on + strand, within RR42_RS00995at 234.159 kb on + strand, within RR42_RS00995at 234.160 kb on - strand, within RR42_RS00995at 234.201 kb on + strand, within RR42_RS00995at 234.201 kb on + strand, within RR42_RS00995at 234.202 kb on - strand, within RR42_RS00995at 234.202 kb on - strand, within RR42_RS00995

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Cobalt chloride 0.5 mM
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231,979 + RR42_RS00985 0.16 -0.5
232,011 + RR42_RS00985 0.21 -0.2
232,011 + RR42_RS00985 0.21 -0.4
232,011 + RR42_RS00985 0.21 +0.1
232,011 + RR42_RS00985 0.21 +0.9
232,013 + RR42_RS00985 0.21 -0.1
232,014 - RR42_RS00985 0.21 -1.7
232,014 - RR42_RS00985 0.21 -1.4
232,077 + RR42_RS00985 0.32 -2.1
232,078 - RR42_RS00985 0.32 -1.3
232,078 - RR42_RS00985 0.32 +0.4
232,091 - RR42_RS00985 0.34 +0.1
232,116 + RR42_RS00985 0.38 +0.6
232,116 + RR42_RS00985 0.38 +0.3
232,116 + RR42_RS00985 0.38 -1.7
232,116 + RR42_RS00985 0.38 +0.7
232,117 - RR42_RS00985 0.38 -0.6
232,152 + RR42_RS00985 0.44 +0.7
232,153 - RR42_RS00985 0.44 -0.6
232,239 + RR42_RS00985 0.58 -1.2
232,239 + RR42_RS00985 0.58 -0.1
232,239 + RR42_RS00985 0.58 +0.2
232,239 + RR42_RS00985 0.58 +0.8
232,240 - RR42_RS00985 0.58 +0.5
232,240 - RR42_RS00985 0.58 -1.0
232,295 + RR42_RS00985 0.67 -1.9
232,295 + RR42_RS00985 0.67 -0.1
232,295 + RR42_RS00985 0.67 -0.9
232,295 + RR42_RS00985 0.67 +0.8
232,296 - RR42_RS00985 0.67 -1.7
232,296 - RR42_RS00985 0.67 -1.1
232,296 - RR42_RS00985 0.67 +0.5
232,296 - RR42_RS00985 0.67 -0.6
232,395 + RR42_RS00985 0.83 -0.8
232,396 - RR42_RS00985 0.84 +1.3
232,396 - RR42_RS00985 0.84 +1.6
232,416 + RR42_RS00985 0.87 +0.1
232,442 + +1.6
232,442 + +1.4
232,443 - +0.6
232,443 - +1.8
232,443 - -1.0
232,508 + +0.3
232,508 + -0.6
232,537 - +2.9
232,553 + -0.1
232,554 - +0.2
232,751 + RR42_RS00990 0.33 -1.0
232,751 + RR42_RS00990 0.33 -1.9
232,751 + RR42_RS00990 0.33 +1.2
232,751 + RR42_RS00990 0.33 +0.8
232,890 + RR42_RS00990 0.52 +0.6
232,977 - RR42_RS00990 0.64 +0.2
232,992 + RR42_RS00990 0.66 -0.6
232,993 - RR42_RS00990 0.66 -0.1
232,993 - RR42_RS00990 0.66 +1.5
232,993 - RR42_RS00990 0.66 -0.3
233,247 - -0.4
233,452 + -1.3
233,457 + +0.8
233,457 + -1.0
233,458 - +1.1
233,458 - -0.5
233,458 - -0.8
233,458 - +1.8
233,608 + RR42_RS00995 0.13 +0.1
233,850 - RR42_RS00995 0.29 +1.1
233,933 + RR42_RS00995 0.35 +0.3
233,934 - RR42_RS00995 0.35 -0.5
234,030 + RR42_RS00995 0.41 -0.3
234,030 + RR42_RS00995 0.41 -0.0
234,031 - RR42_RS00995 0.41 +0.5
234,080 + RR42_RS00995 0.44 -0.6
234,080 + RR42_RS00995 0.44 +1.1
234,081 - RR42_RS00995 0.44 +0.3
234,130 - RR42_RS00995 0.48 +0.9
234,130 - RR42_RS00995 0.48 +0.2
234,159 + RR42_RS00995 0.49 +0.8
234,159 + RR42_RS00995 0.49 -1.2
234,160 - RR42_RS00995 0.49 +0.6
234,201 + RR42_RS00995 0.52 +1.9
234,201 + RR42_RS00995 0.52 +0.3
234,202 - RR42_RS00995 0.52 +1.1
234,202 - RR42_RS00995 0.52 +2.2

Or see this region's nucleotide sequence