Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS00740

Experiment: R2A with Cobalt chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS00735 and RR42_RS00740 are separated by 66 nucleotidesRR42_RS00740 and RR42_RS00745 are separated by 340 nucleotides RR42_RS00735: RR42_RS00735 - fumarylacetoacetate hydrolase, at 185,200 to 186,183 _RS00735 RR42_RS00740: RR42_RS00740 - ABC transporter substrate-binding protein, at 186,250 to 187,206 _RS00740 RR42_RS00745: RR42_RS00745 - IclR family transcriptional regulator, at 187,547 to 188,383 _RS00745 Position (kb) 186 187 188Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 185.360 kb on + strand, within RR42_RS00735at 185.440 kb on - strand, within RR42_RS00735at 185.440 kb on - strand, within RR42_RS00735at 185.585 kb on - strand, within RR42_RS00735at 185.585 kb on - strand, within RR42_RS00735at 185.668 kb on + strand, within RR42_RS00735at 185.668 kb on + strand, within RR42_RS00735at 185.668 kb on + strand, within RR42_RS00735at 185.668 kb on + strand, within RR42_RS00735at 185.668 kb on + strand, within RR42_RS00735at 185.669 kb on - strand, within RR42_RS00735at 185.669 kb on - strand, within RR42_RS00735at 185.669 kb on - strand, within RR42_RS00735at 185.669 kb on - strand, within RR42_RS00735at 185.803 kb on - strand, within RR42_RS00735at 185.843 kb on + strand, within RR42_RS00735at 185.843 kb on + strand, within RR42_RS00735at 185.843 kb on + strand, within RR42_RS00735at 185.844 kb on - strand, within RR42_RS00735at 185.844 kb on - strand, within RR42_RS00735at 185.844 kb on - strand, within RR42_RS00735at 185.844 kb on - strand, within RR42_RS00735at 186.026 kb on + strand, within RR42_RS00735at 186.027 kb on - strand, within RR42_RS00735at 186.027 kb on - strand, within RR42_RS00735at 186.027 kb on - strand, within RR42_RS00735at 186.104 kb on + strandat 186.104 kb on + strandat 186.105 kb on - strandat 186.185 kb on + strandat 186.185 kb on + strandat 186.185 kb on + strandat 186.185 kb on + strandat 186.185 kb on + strandat 186.185 kb on + strandat 186.186 kb on - strandat 186.186 kb on - strandat 186.186 kb on - strandat 186.186 kb on - strandat 186.186 kb on - strandat 186.197 kb on + strandat 186.252 kb on - strandat 186.476 kb on + strand, within RR42_RS00740at 186.477 kb on - strand, within RR42_RS00740at 186.477 kb on - strand, within RR42_RS00740at 186.477 kb on - strand, within RR42_RS00740at 186.672 kb on - strand, within RR42_RS00740at 186.788 kb on + strand, within RR42_RS00740at 186.788 kb on + strand, within RR42_RS00740at 186.788 kb on + strand, within RR42_RS00740at 186.788 kb on + strand, within RR42_RS00740at 186.789 kb on - strand, within RR42_RS00740at 186.789 kb on - strand, within RR42_RS00740at 186.789 kb on - strand, within RR42_RS00740at 186.897 kb on - strand, within RR42_RS00740at 186.897 kb on - strand, within RR42_RS00740at 186.911 kb on + strand, within RR42_RS00740at 186.962 kb on + strand, within RR42_RS00740at 186.963 kb on - strand, within RR42_RS00740at 186.963 kb on - strand, within RR42_RS00740at 186.963 kb on - strand, within RR42_RS00740at 187.202 kb on - strandat 187.286 kb on - strandat 187.358 kb on + strandat 187.378 kb on + strandat 187.378 kb on + strandat 187.378 kb on + strandat 187.378 kb on + strandat 187.378 kb on + strandat 187.378 kb on + strandat 187.378 kb on + strandat 187.378 kb on + strandat 187.379 kb on - strandat 187.379 kb on - strandat 187.379 kb on - strandat 187.379 kb on - strandat 187.380 kb on + strandat 187.380 kb on + strandat 187.380 kb on + strandat 187.380 kb on + strandat 187.380 kb on + strandat 187.380 kb on + strandat 187.380 kb on + strandat 187.380 kb on + strandat 187.380 kb on + strandat 187.380 kb on + strandat 187.380 kb on + strandat 187.380 kb on + strandat 187.381 kb on - strandat 187.381 kb on - strandat 187.381 kb on - strandat 187.381 kb on - strandat 187.381 kb on - strandat 187.381 kb on - strandat 187.381 kb on - strandat 187.381 kb on - strandat 187.381 kb on - strandat 187.444 kb on + strandat 187.445 kb on - strandat 187.445 kb on - strandat 187.446 kb on + strandat 187.450 kb on - strandat 187.450 kb on - strandat 187.498 kb on - strandat 187.498 kb on - strandat 187.507 kb on + strandat 187.507 kb on + strandat 187.508 kb on - strandat 187.508 kb on - strandat 187.706 kb on + strand, within RR42_RS00745at 187.764 kb on - strand, within RR42_RS00745at 188.015 kb on + strand, within RR42_RS00745at 188.016 kb on - strand, within RR42_RS00745at 188.016 kb on - strand, within RR42_RS00745at 188.081 kb on - strand, within RR42_RS00745at 188.081 kb on - strand, within RR42_RS00745at 188.081 kb on - strand, within RR42_RS00745at 188.081 kb on - strand, within RR42_RS00745at 188.111 kb on + strandat 188.111 kb on + strand, within RR42_RS00745at 188.112 kb on - strand, within RR42_RS00745at 188.112 kb on - strand, within RR42_RS00745

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Cobalt chloride 0.5 mM
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185,360 + RR42_RS00735 0.16 +0.3
185,440 - RR42_RS00735 0.24 -1.0
185,440 - RR42_RS00735 0.24 -2.1
185,585 - RR42_RS00735 0.39 +0.3
185,585 - RR42_RS00735 0.39 -0.2
185,668 + RR42_RS00735 0.48 +0.9
185,668 + RR42_RS00735 0.48 -0.5
185,668 + RR42_RS00735 0.48 -1.3
185,668 + RR42_RS00735 0.48 +1.3
185,668 + RR42_RS00735 0.48 -1.2
185,669 - RR42_RS00735 0.48 -0.7
185,669 - RR42_RS00735 0.48 +0.0
185,669 - RR42_RS00735 0.48 +1.8
185,669 - RR42_RS00735 0.48 +0.0
185,803 - RR42_RS00735 0.61 +1.3
185,843 + RR42_RS00735 0.65 +0.4
185,843 + RR42_RS00735 0.65 +0.4
185,843 + RR42_RS00735 0.65 -0.8
185,844 - RR42_RS00735 0.65 +0.2
185,844 - RR42_RS00735 0.65 +0.3
185,844 - RR42_RS00735 0.65 +0.9
185,844 - RR42_RS00735 0.65 +0.4
186,026 + RR42_RS00735 0.84 -0.4
186,027 - RR42_RS00735 0.84 -0.4
186,027 - RR42_RS00735 0.84 +0.1
186,027 - RR42_RS00735 0.84 -0.8
186,104 + -0.5
186,104 + +0.2
186,105 - -0.9
186,185 + +2.3
186,185 + +0.6
186,185 + +2.0
186,185 + -0.4
186,185 + +0.4
186,185 + +1.0
186,186 - -0.2
186,186 - -0.4
186,186 - -0.8
186,186 - -0.2
186,186 - +0.3
186,197 + +0.0
186,252 - +0.3
186,476 + RR42_RS00740 0.24 +0.6
186,477 - RR42_RS00740 0.24 -0.4
186,477 - RR42_RS00740 0.24 +0.2
186,477 - RR42_RS00740 0.24 +1.5
186,672 - RR42_RS00740 0.44 +0.2
186,788 + RR42_RS00740 0.56 +0.3
186,788 + RR42_RS00740 0.56 -1.1
186,788 + RR42_RS00740 0.56 +0.2
186,788 + RR42_RS00740 0.56 -1.0
186,789 - RR42_RS00740 0.56 +0.8
186,789 - RR42_RS00740 0.56 -0.7
186,789 - RR42_RS00740 0.56 -0.6
186,897 - RR42_RS00740 0.68 +0.9
186,897 - RR42_RS00740 0.68 +1.6
186,911 + RR42_RS00740 0.69 -0.5
186,962 + RR42_RS00740 0.74 +0.8
186,963 - RR42_RS00740 0.75 +1.6
186,963 - RR42_RS00740 0.75 -1.5
186,963 - RR42_RS00740 0.75 +0.8
187,202 - -0.4
187,286 - -0.2
187,358 + -0.6
187,378 + +1.2
187,378 + -0.2
187,378 + +0.1
187,378 + +1.1
187,378 + -1.2
187,378 + +0.5
187,378 + +2.2
187,378 + -0.4
187,379 - +1.2
187,379 - -0.0
187,379 - -0.8
187,379 - -0.1
187,380 + -1.9
187,380 + +0.7
187,380 + +1.7
187,380 + +0.5
187,380 + -0.6
187,380 + +0.9
187,380 + +0.2
187,380 + +1.2
187,380 + +0.9
187,380 + +1.4
187,380 + -0.2
187,380 + +3.4
187,381 - -0.5
187,381 - -0.4
187,381 - -0.1
187,381 - -0.7
187,381 - +0.5
187,381 - +0.0
187,381 - -0.8
187,381 - +0.3
187,381 - +2.2
187,444 + +1.2
187,445 - -2.4
187,445 - +0.8
187,446 + +0.1
187,450 - -0.8
187,450 - +0.2
187,498 - -1.3
187,498 - -0.0
187,507 + +3.8
187,507 + +1.4
187,508 - -0.0
187,508 - +1.1
187,706 + RR42_RS00745 0.19 -1.4
187,764 - RR42_RS00745 0.26 +0.6
188,015 + RR42_RS00745 0.56 -0.0
188,016 - RR42_RS00745 0.56 -2.1
188,016 - RR42_RS00745 0.56 -1.2
188,081 - RR42_RS00745 0.64 +1.8
188,081 - RR42_RS00745 0.64 -2.6
188,081 - RR42_RS00745 0.64 -0.5
188,081 - RR42_RS00745 0.64 -0.3
188,111 + +0.6
188,111 + RR42_RS00745 0.67 -2.3
188,112 - RR42_RS00745 0.68 -0.9
188,112 - RR42_RS00745 0.68 +0.1

Or see this region's nucleotide sequence