Experiment: R2A with Cobalt chloride 0.04 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS19645 and CA265_RS19650 overlap by 1 nucleotides CA265_RS19650 and CA265_RS19655 are separated by 174 nucleotides CA265_RS19655 and CA265_RS19660 are separated by 51 nucleotides CA265_RS19660 and CA265_RS19665 overlap by 11 nucleotides CA265_RS19665 and CA265_RS19670 overlap by 1 nucleotides
CA265_RS19645: CA265_RS19645 - GNAT family N-acetyltransferase, at 4,867,494 to 4,868,033
_RS19645
CA265_RS19650: CA265_RS19650 - DNA-3-methyladenine glycosylase, at 4,868,033 to 4,868,596
_RS19650
CA265_RS19655: CA265_RS19655 - carboxymuconolactone decarboxylase family protein, at 4,868,771 to 4,869,124
_RS19655
CA265_RS19660: CA265_RS19660 - hypothetical protein, at 4,869,176 to 4,869,535
_RS19660
CA265_RS19665: CA265_RS19665 - cysteine methyltransferase, at 4,869,525 to 4,869,857
_RS19665
CA265_RS19670: CA265_RS19670 - tRNA (guanosine(46)-N7)-methyltransferase TrmB, at 4,869,857 to 4,870,507
_RS19670
Position (kb) 4868
4869
4870 Strain fitness (log2 ratio) -2
-1
0
1 at 4867.801 kb on - strand, within CA265_RS19645 at 4867.894 kb on + strand, within CA265_RS19645 at 4867.922 kb on - strand, within CA265_RS19645 at 4868.018 kb on + strand at 4868.019 kb on - strand at 4868.035 kb on - strand at 4868.143 kb on + strand, within CA265_RS19650 at 4868.159 kb on + strand, within CA265_RS19650 at 4868.160 kb on - strand, within CA265_RS19650 at 4868.241 kb on + strand, within CA265_RS19650 at 4868.242 kb on - strand, within CA265_RS19650 at 4868.357 kb on + strand, within CA265_RS19650 at 4868.357 kb on + strand, within CA265_RS19650 at 4868.381 kb on + strand, within CA265_RS19650 at 4868.509 kb on - strand, within CA265_RS19650 at 4868.538 kb on + strand, within CA265_RS19650 at 4868.538 kb on + strand, within CA265_RS19650 at 4868.539 kb on - strand, within CA265_RS19650 at 4868.582 kb on + strand at 4868.597 kb on - strand at 4868.600 kb on - strand at 4868.628 kb on + strand at 4868.763 kb on - strand at 4868.773 kb on - strand at 4868.773 kb on - strand at 4868.835 kb on - strand, within CA265_RS19655 at 4868.835 kb on - strand, within CA265_RS19655 at 4868.842 kb on + strand, within CA265_RS19655 at 4868.894 kb on + strand, within CA265_RS19655 at 4868.915 kb on - strand, within CA265_RS19655 at 4868.929 kb on + strand, within CA265_RS19655 at 4869.047 kb on - strand, within CA265_RS19655 at 4869.141 kb on + strand at 4869.219 kb on + strand, within CA265_RS19660 at 4869.287 kb on + strand, within CA265_RS19660 at 4869.329 kb on - strand, within CA265_RS19660 at 4869.397 kb on + strand, within CA265_RS19660 at 4869.397 kb on + strand, within CA265_RS19660 at 4869.397 kb on + strand, within CA265_RS19660 at 4869.421 kb on + strand, within CA265_RS19660 at 4869.475 kb on - strand, within CA265_RS19660 at 4869.506 kb on + strand at 4869.527 kb on - strand at 4869.572 kb on + strand, within CA265_RS19665 at 4869.678 kb on + strand, within CA265_RS19665 at 4869.679 kb on - strand, within CA265_RS19665 at 4869.682 kb on - strand, within CA265_RS19665 at 4869.682 kb on - strand, within CA265_RS19665 at 4869.722 kb on - strand, within CA265_RS19665 at 4869.830 kb on - strand at 4869.878 kb on - strand at 4869.879 kb on + strand at 4869.899 kb on + strand at 4869.938 kb on + strand, within CA265_RS19670 at 4869.963 kb on + strand, within CA265_RS19670 at 4869.986 kb on + strand, within CA265_RS19670 at 4869.987 kb on - strand, within CA265_RS19670 at 4870.021 kb on + strand, within CA265_RS19670 at 4870.024 kb on - strand, within CA265_RS19670 at 4870.024 kb on - strand, within CA265_RS19670
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Cobalt chloride 0.04 mM remove 4,867,801 - CA265_RS19645 0.57 +0.9 4,867,894 + CA265_RS19645 0.74 -0.1 4,867,922 - CA265_RS19645 0.79 -0.5 4,868,018 + +0.2 4,868,019 - +0.4 4,868,035 - -0.9 4,868,143 + CA265_RS19650 0.20 +0.2 4,868,159 + CA265_RS19650 0.22 -0.3 4,868,160 - CA265_RS19650 0.23 +1.2 4,868,241 + CA265_RS19650 0.37 -0.2 4,868,242 - CA265_RS19650 0.37 +0.3 4,868,357 + CA265_RS19650 0.57 +0.3 4,868,357 + CA265_RS19650 0.57 +0.3 4,868,381 + CA265_RS19650 0.62 +0.5 4,868,509 - CA265_RS19650 0.84 -0.4 4,868,538 + CA265_RS19650 0.90 +0.7 4,868,538 + CA265_RS19650 0.90 +0.3 4,868,539 - CA265_RS19650 0.90 -0.6 4,868,582 + +0.1 4,868,597 - +1.6 4,868,600 - -0.4 4,868,628 + +0.4 4,868,763 - +1.2 4,868,773 - +0.7 4,868,773 - +0.7 4,868,835 - CA265_RS19655 0.18 +0.6 4,868,835 - CA265_RS19655 0.18 +0.1 4,868,842 + CA265_RS19655 0.20 +0.1 4,868,894 + CA265_RS19655 0.35 +0.7 4,868,915 - CA265_RS19655 0.41 -0.3 4,868,929 + CA265_RS19655 0.45 +0.6 4,869,047 - CA265_RS19655 0.78 +0.5 4,869,141 + +0.7 4,869,219 + CA265_RS19660 0.12 +0.5 4,869,287 + CA265_RS19660 0.31 -0.2 4,869,329 - CA265_RS19660 0.42 +0.9 4,869,397 + CA265_RS19660 0.61 -0.1 4,869,397 + CA265_RS19660 0.61 +0.4 4,869,397 + CA265_RS19660 0.61 +0.4 4,869,421 + CA265_RS19660 0.68 +0.4 4,869,475 - CA265_RS19660 0.83 -0.7 4,869,506 + +0.4 4,869,527 - -0.1 4,869,572 + CA265_RS19665 0.14 -0.2 4,869,678 + CA265_RS19665 0.46 +0.8 4,869,679 - CA265_RS19665 0.46 -0.9 4,869,682 - CA265_RS19665 0.47 -0.6 4,869,682 - CA265_RS19665 0.47 +0.7 4,869,722 - CA265_RS19665 0.59 +0.4 4,869,830 - -2.2 4,869,878 - -0.1 4,869,879 + -1.3 4,869,899 + +1.1 4,869,938 + CA265_RS19670 0.12 -0.3 4,869,963 + CA265_RS19670 0.16 +0.6 4,869,986 + CA265_RS19670 0.20 -0.6 4,869,987 - CA265_RS19670 0.20 -0.8 4,870,021 + CA265_RS19670 0.25 +1.3 4,870,024 - CA265_RS19670 0.26 +0.6 4,870,024 - CA265_RS19670 0.26 -1.9
Or see this region's nucleotide sequence