Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_29315

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_29310 and AO356_29315 are separated by 79 nucleotidesAO356_29315 and AO356_29320 overlap by 4 nucleotides AO356_29310: AO356_29310 - aliphatic sulfonate ABC transporter substrate-binding protein, at 6,816,391 to 6,817,401 _29310 AO356_29315: AO356_29315 - acyl-CoA dehydrogenase, at 6,817,481 to 6,818,668 _29315 AO356_29320: AO356_29320 - dihydrofolate reductase, at 6,818,665 to 6,819,624 _29320 Position (kb) 6817 6818 6819Strain fitness (log2 ratio) -1 0 1at 6816.604 kb on + strand, within AO356_29310at 6816.838 kb on + strand, within AO356_29310at 6816.985 kb on + strand, within AO356_29310at 6816.986 kb on - strand, within AO356_29310at 6816.986 kb on - strand, within AO356_29310at 6816.993 kb on - strand, within AO356_29310at 6817.052 kb on - strand, within AO356_29310at 6817.066 kb on + strand, within AO356_29310at 6817.067 kb on - strand, within AO356_29310at 6817.067 kb on - strand, within AO356_29310at 6817.129 kb on + strand, within AO356_29310at 6817.129 kb on + strand, within AO356_29310at 6817.130 kb on - strand, within AO356_29310at 6817.130 kb on - strand, within AO356_29310at 6817.131 kb on + strand, within AO356_29310at 6817.240 kb on + strand, within AO356_29310at 6817.240 kb on + strand, within AO356_29310at 6817.240 kb on + strand, within AO356_29310at 6817.241 kb on - strand, within AO356_29310at 6817.241 kb on - strand, within AO356_29310at 6817.241 kb on - strand, within AO356_29310at 6817.590 kb on - strandat 6817.973 kb on + strand, within AO356_29315at 6817.974 kb on - strand, within AO356_29315at 6818.466 kb on - strand, within AO356_29315at 6818.839 kb on + strand, within AO356_29320at 6818.921 kb on - strand, within AO356_29320at 6818.955 kb on + strand, within AO356_29320at 6818.955 kb on + strand, within AO356_29320at 6819.264 kb on - strand, within AO356_29320at 6819.297 kb on + strand, within AO356_29320at 6819.472 kb on + strand, within AO356_29320at 6819.540 kb on - strandat 6819.608 kb on + strandat 6819.609 kb on - strandat 6819.609 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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6,816,604 + AO356_29310 0.21 +0.1
6,816,838 + AO356_29310 0.44 +1.1
6,816,985 + AO356_29310 0.59 +0.1
6,816,986 - AO356_29310 0.59 +0.2
6,816,986 - AO356_29310 0.59 +0.1
6,816,993 - AO356_29310 0.60 -0.1
6,817,052 - AO356_29310 0.65 +0.7
6,817,066 + AO356_29310 0.67 -0.1
6,817,067 - AO356_29310 0.67 -0.2
6,817,067 - AO356_29310 0.67 +0.3
6,817,129 + AO356_29310 0.73 +0.3
6,817,129 + AO356_29310 0.73 +1.7
6,817,130 - AO356_29310 0.73 -0.0
6,817,130 - AO356_29310 0.73 +1.3
6,817,131 + AO356_29310 0.73 -1.1
6,817,240 + AO356_29310 0.84 -0.0
6,817,240 + AO356_29310 0.84 +0.4
6,817,240 + AO356_29310 0.84 -1.1
6,817,241 - AO356_29310 0.84 +0.1
6,817,241 - AO356_29310 0.84 -1.0
6,817,241 - AO356_29310 0.84 +0.3
6,817,590 - +0.1
6,817,973 + AO356_29315 0.41 +0.9
6,817,974 - AO356_29315 0.41 +0.0
6,818,466 - AO356_29315 0.83 -0.4
6,818,839 + AO356_29320 0.18 -0.1
6,818,921 - AO356_29320 0.27 +0.5
6,818,955 + AO356_29320 0.30 +0.6
6,818,955 + AO356_29320 0.30 +0.8
6,819,264 - AO356_29320 0.62 +0.0
6,819,297 + AO356_29320 0.66 -0.2
6,819,472 + AO356_29320 0.84 +0.5
6,819,540 - -0.2
6,819,608 + +1.2
6,819,609 - +0.4
6,819,609 - +0.1

Or see this region's nucleotide sequence