Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_19910

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_19905 and AO356_19910 are separated by 60 nucleotidesAO356_19910 and AO356_19915 overlap by 4 nucleotides AO356_19905: AO356_19905 - aminotransferase, at 4,459,209 to 4,460,465 _19905 AO356_19910: AO356_19910 - cystathionine gamma-synthase, at 4,460,526 to 4,461,671 _19910 AO356_19915: AO356_19915 - pyruvate formate lyase-activating protein, at 4,461,668 to 4,463,152 _19915 Position (kb) 4460 4461 4462Strain fitness (log2 ratio) -2 -1 0 1 2at 4459.526 kb on - strand, within AO356_19905at 4459.526 kb on - strand, within AO356_19905at 4459.526 kb on - strand, within AO356_19905at 4459.526 kb on - strand, within AO356_19905at 4459.564 kb on + strand, within AO356_19905at 4459.564 kb on + strand, within AO356_19905at 4459.565 kb on - strand, within AO356_19905at 4459.696 kb on + strand, within AO356_19905at 4459.696 kb on + strand, within AO356_19905at 4459.697 kb on - strand, within AO356_19905at 4459.697 kb on - strand, within AO356_19905at 4459.697 kb on - strand, within AO356_19905at 4459.697 kb on - strand, within AO356_19905at 4459.750 kb on - strand, within AO356_19905at 4459.799 kb on - strand, within AO356_19905at 4459.799 kb on - strand, within AO356_19905at 4459.807 kb on + strand, within AO356_19905at 4459.808 kb on - strand, within AO356_19905at 4459.910 kb on + strand, within AO356_19905at 4459.911 kb on - strand, within AO356_19905at 4459.927 kb on + strand, within AO356_19905at 4459.927 kb on + strand, within AO356_19905at 4459.927 kb on + strand, within AO356_19905at 4459.928 kb on - strand, within AO356_19905at 4459.928 kb on - strand, within AO356_19905at 4459.928 kb on - strand, within AO356_19905at 4459.928 kb on - strand, within AO356_19905at 4459.928 kb on - strand, within AO356_19905at 4459.928 kb on - strand, within AO356_19905at 4460.023 kb on - strand, within AO356_19905at 4460.083 kb on - strand, within AO356_19905at 4460.085 kb on + strand, within AO356_19905at 4460.085 kb on + strand, within AO356_19905at 4460.085 kb on + strand, within AO356_19905at 4460.085 kb on + strand, within AO356_19905at 4460.085 kb on + strand, within AO356_19905at 4460.085 kb on + strand, within AO356_19905at 4460.086 kb on - strand, within AO356_19905at 4460.086 kb on - strand, within AO356_19905at 4460.086 kb on - strand, within AO356_19905at 4460.086 kb on - strand, within AO356_19905at 4460.126 kb on + strand, within AO356_19905at 4460.126 kb on + strand, within AO356_19905at 4460.127 kb on - strand, within AO356_19905at 4460.203 kb on + strand, within AO356_19905at 4460.203 kb on + strand, within AO356_19905at 4460.203 kb on + strand, within AO356_19905at 4460.203 kb on + strand, within AO356_19905at 4460.203 kb on + strand, within AO356_19905at 4460.204 kb on - strand, within AO356_19905at 4460.204 kb on - strand, within AO356_19905at 4460.204 kb on - strand, within AO356_19905at 4460.300 kb on - strand, within AO356_19905at 4460.300 kb on - strand, within AO356_19905at 4460.403 kb on + strandat 4460.403 kb on + strandat 4460.404 kb on - strandat 4460.404 kb on - strandat 4460.404 kb on - strandat 4460.404 kb on - strandat 4460.404 kb on - strandat 4460.404 kb on - strandat 4460.439 kb on + strandat 4460.479 kb on + strandat 4460.527 kb on + strandat 4460.528 kb on - strandat 4460.528 kb on - strandat 4460.613 kb on - strandat 4460.866 kb on + strand, within AO356_19910at 4460.867 kb on - strand, within AO356_19910at 4460.869 kb on + strand, within AO356_19910at 4460.869 kb on + strand, within AO356_19910at 4460.870 kb on - strand, within AO356_19910at 4460.870 kb on - strand, within AO356_19910at 4460.870 kb on - strand, within AO356_19910at 4460.883 kb on - strand, within AO356_19910at 4460.902 kb on + strand, within AO356_19910at 4461.001 kb on - strand, within AO356_19910at 4461.001 kb on - strand, within AO356_19910at 4461.001 kb on - strand, within AO356_19910at 4461.013 kb on + strand, within AO356_19910at 4461.014 kb on - strand, within AO356_19910at 4461.014 kb on - strand, within AO356_19910at 4461.041 kb on - strand, within AO356_19910at 4461.100 kb on + strand, within AO356_19910at 4461.100 kb on + strand, within AO356_19910at 4461.100 kb on + strand, within AO356_19910at 4461.100 kb on + strand, within AO356_19910at 4461.101 kb on - strand, within AO356_19910at 4461.116 kb on - strand, within AO356_19910at 4461.116 kb on - strand, within AO356_19910at 4461.116 kb on - strand, within AO356_19910at 4461.123 kb on + strand, within AO356_19910at 4461.123 kb on + strand, within AO356_19910at 4461.123 kb on + strand, within AO356_19910at 4461.124 kb on - strand, within AO356_19910at 4461.124 kb on - strand, within AO356_19910at 4461.156 kb on + strand, within AO356_19910at 4461.173 kb on + strand, within AO356_19910at 4461.173 kb on + strand, within AO356_19910at 4461.173 kb on + strand, within AO356_19910at 4461.173 kb on + strand, within AO356_19910at 4461.174 kb on - strand, within AO356_19910at 4461.174 kb on - strand, within AO356_19910at 4461.236 kb on + strand, within AO356_19910at 4461.356 kb on + strand, within AO356_19910at 4461.383 kb on + strand, within AO356_19910at 4461.384 kb on - strand, within AO356_19910at 4461.397 kb on + strand, within AO356_19910at 4461.397 kb on + strand, within AO356_19910at 4461.397 kb on + strand, within AO356_19910at 4461.397 kb on + strand, within AO356_19910at 4461.397 kb on + strand, within AO356_19910at 4461.397 kb on + strand, within AO356_19910at 4461.398 kb on - strand, within AO356_19910at 4461.398 kb on - strand, within AO356_19910at 4461.398 kb on - strand, within AO356_19910at 4461.398 kb on - strand, within AO356_19910at 4461.398 kb on - strand, within AO356_19910at 4461.398 kb on - strand, within AO356_19910at 4461.398 kb on - strand, within AO356_19910at 4461.398 kb on - strand, within AO356_19910at 4461.403 kb on + strand, within AO356_19910at 4461.403 kb on + strand, within AO356_19910at 4461.403 kb on + strand, within AO356_19910at 4461.403 kb on + strand, within AO356_19910at 4461.403 kb on + strand, within AO356_19910at 4461.403 kb on + strand, within AO356_19910at 4461.403 kb on + strand, within AO356_19910at 4461.403 kb on + strand, within AO356_19910at 4461.403 kb on + strand, within AO356_19910at 4461.404 kb on - strand, within AO356_19910at 4461.404 kb on - strand, within AO356_19910at 4461.404 kb on - strand, within AO356_19910at 4461.404 kb on - strand, within AO356_19910at 4461.404 kb on - strand, within AO356_19910at 4461.404 kb on - strand, within AO356_19910at 4461.454 kb on + strand, within AO356_19910at 4461.454 kb on + strand, within AO356_19910at 4461.454 kb on + strand, within AO356_19910at 4461.454 kb on + strand, within AO356_19910at 4461.454 kb on + strand, within AO356_19910at 4461.454 kb on + strand, within AO356_19910at 4461.455 kb on - strand, within AO356_19910at 4461.455 kb on - strand, within AO356_19910at 4461.455 kb on - strand, within AO356_19910at 4461.455 kb on - strand, within AO356_19910at 4461.455 kb on - strand, within AO356_19910at 4461.455 kb on - strand, within AO356_19910at 4461.455 kb on - strand, within AO356_19910at 4461.455 kb on - strand, within AO356_19910at 4461.455 kb on - strand, within AO356_19910at 4461.455 kb on - strand, within AO356_19910at 4461.455 kb on - strand, within AO356_19910at 4461.478 kb on + strand, within AO356_19910at 4461.478 kb on + strand, within AO356_19910at 4461.479 kb on - strand, within AO356_19910at 4461.479 kb on - strand, within AO356_19910at 4461.560 kb on - strandat 4461.560 kb on - strandat 4461.599 kb on - strandat 4461.599 kb on - strandat 4461.602 kb on + strandat 4461.603 kb on - strandat 4461.603 kb on - strandat 4461.603 kb on - strandat 4461.644 kb on + strandat 4461.645 kb on - strandat 4461.645 kb on - strandat 4461.652 kb on - strandat 4461.652 kb on - strandat 4461.652 kb on - strandat 4461.702 kb on + strandat 4461.702 kb on + strandat 4461.702 kb on + strandat 4461.702 kb on + strandat 4461.702 kb on + strandat 4461.702 kb on + strandat 4461.702 kb on + strandat 4461.702 kb on + strandat 4461.702 kb on + strandat 4461.702 kb on + strandat 4461.703 kb on - strandat 4461.703 kb on - strandat 4461.703 kb on - strandat 4461.703 kb on - strandat 4461.703 kb on - strandat 4461.703 kb on - strandat 4461.703 kb on - strandat 4461.703 kb on - strandat 4461.758 kb on - strandat 4461.758 kb on - strandat 4461.758 kb on - strandat 4461.892 kb on - strand, within AO356_19915at 4461.946 kb on + strand, within AO356_19915at 4461.948 kb on + strand, within AO356_19915at 4461.949 kb on - strand, within AO356_19915at 4461.949 kb on - strand, within AO356_19915at 4461.949 kb on - strand, within AO356_19915at 4462.188 kb on + strand, within AO356_19915at 4462.210 kb on + strand, within AO356_19915at 4462.211 kb on - strand, within AO356_19915at 4462.263 kb on + strand, within AO356_19915at 4462.263 kb on + strand, within AO356_19915at 4462.264 kb on - strand, within AO356_19915at 4462.264 kb on - strand, within AO356_19915at 4462.264 kb on - strand, within AO356_19915at 4462.327 kb on + strand, within AO356_19915at 4462.351 kb on - strand, within AO356_19915at 4462.351 kb on - strand, within AO356_19915at 4462.383 kb on - strand, within AO356_19915at 4462.482 kb on + strand, within AO356_19915at 4462.482 kb on + strand, within AO356_19915at 4462.483 kb on - strand, within AO356_19915at 4462.483 kb on - strand, within AO356_19915at 4462.497 kb on + strand, within AO356_19915at 4462.497 kb on + strand, within AO356_19915at 4462.554 kb on + strand, within AO356_19915at 4462.555 kb on - strand, within AO356_19915at 4462.557 kb on + strand, within AO356_19915at 4462.558 kb on - strand, within AO356_19915at 4462.595 kb on - strand, within AO356_19915at 4462.611 kb on - strand, within AO356_19915at 4462.651 kb on + strand, within AO356_19915at 4462.651 kb on + strand, within AO356_19915at 4462.652 kb on - strand, within AO356_19915at 4462.652 kb on - strand, within AO356_19915at 4462.653 kb on + strand, within AO356_19915at 4462.653 kb on + strand, within AO356_19915at 4462.653 kb on + strand, within AO356_19915at 4462.653 kb on + strand, within AO356_19915

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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4,459,526 - AO356_19905 0.25 +0.3
4,459,526 - AO356_19905 0.25 -0.6
4,459,526 - AO356_19905 0.25 +1.2
4,459,526 - AO356_19905 0.25 -1.0
4,459,564 + AO356_19905 0.28 -0.5
4,459,564 + AO356_19905 0.28 +0.9
4,459,565 - AO356_19905 0.28 +1.2
4,459,696 + AO356_19905 0.39 -0.7
4,459,696 + AO356_19905 0.39 +0.5
4,459,697 - AO356_19905 0.39 +0.8
4,459,697 - AO356_19905 0.39 +0.5
4,459,697 - AO356_19905 0.39 +0.1
4,459,697 - AO356_19905 0.39 +0.8
4,459,750 - AO356_19905 0.43 +0.4
4,459,799 - AO356_19905 0.47 +0.4
4,459,799 - AO356_19905 0.47 +0.2
4,459,807 + AO356_19905 0.48 +0.7
4,459,808 - AO356_19905 0.48 +0.4
4,459,910 + AO356_19905 0.56 +0.2
4,459,911 - AO356_19905 0.56 +0.4
4,459,927 + AO356_19905 0.57 -0.2
4,459,927 + AO356_19905 0.57 -0.3
4,459,927 + AO356_19905 0.57 -1.5
4,459,928 - AO356_19905 0.57 +0.0
4,459,928 - AO356_19905 0.57 -0.0
4,459,928 - AO356_19905 0.57 +1.0
4,459,928 - AO356_19905 0.57 +1.0
4,459,928 - AO356_19905 0.57 -1.0
4,459,928 - AO356_19905 0.57 -0.1
4,460,023 - AO356_19905 0.65 +0.2
4,460,083 - AO356_19905 0.70 -0.1
4,460,085 + AO356_19905 0.70 +1.1
4,460,085 + AO356_19905 0.70 -0.6
4,460,085 + AO356_19905 0.70 +1.6
4,460,085 + AO356_19905 0.70 +0.5
4,460,085 + AO356_19905 0.70 +0.6
4,460,085 + AO356_19905 0.70 -0.3
4,460,086 - AO356_19905 0.70 -1.1
4,460,086 - AO356_19905 0.70 -1.1
4,460,086 - AO356_19905 0.70 -0.2
4,460,086 - AO356_19905 0.70 -0.4
4,460,126 + AO356_19905 0.73 +0.3
4,460,126 + AO356_19905 0.73 +0.2
4,460,127 - AO356_19905 0.73 +0.0
4,460,203 + AO356_19905 0.79 -0.1
4,460,203 + AO356_19905 0.79 -0.6
4,460,203 + AO356_19905 0.79 +0.4
4,460,203 + AO356_19905 0.79 -0.4
4,460,203 + AO356_19905 0.79 -0.5
4,460,204 - AO356_19905 0.79 -0.1
4,460,204 - AO356_19905 0.79 -0.3
4,460,204 - AO356_19905 0.79 -0.7
4,460,300 - AO356_19905 0.87 +0.1
4,460,300 - AO356_19905 0.87 +0.5
4,460,403 + -0.1
4,460,403 + +0.2
4,460,404 - -0.9
4,460,404 - +0.0
4,460,404 - +0.1
4,460,404 - +0.6
4,460,404 - -1.0
4,460,404 - +0.3
4,460,439 + +0.1
4,460,479 + -0.7
4,460,527 + -2.6
4,460,528 - -1.3
4,460,528 - -0.2
4,460,613 - +0.3
4,460,866 + AO356_19910 0.30 +0.8
4,460,867 - AO356_19910 0.30 +0.5
4,460,869 + AO356_19910 0.30 +0.3
4,460,869 + AO356_19910 0.30 +1.0
4,460,870 - AO356_19910 0.30 -2.0
4,460,870 - AO356_19910 0.30 -1.4
4,460,870 - AO356_19910 0.30 +0.1
4,460,883 - AO356_19910 0.31 +0.1
4,460,902 + AO356_19910 0.33 -0.4
4,461,001 - AO356_19910 0.41 +0.5
4,461,001 - AO356_19910 0.41 -0.1
4,461,001 - AO356_19910 0.41 -1.1
4,461,013 + AO356_19910 0.42 +0.1
4,461,014 - AO356_19910 0.43 +0.9
4,461,014 - AO356_19910 0.43 +0.1
4,461,041 - AO356_19910 0.45 +1.1
4,461,100 + AO356_19910 0.50 -0.2
4,461,100 + AO356_19910 0.50 +0.7
4,461,100 + AO356_19910 0.50 -0.0
4,461,100 + AO356_19910 0.50 +1.2
4,461,101 - AO356_19910 0.50 -0.1
4,461,116 - AO356_19910 0.51 -0.6
4,461,116 - AO356_19910 0.51 -0.4
4,461,116 - AO356_19910 0.51 +0.5
4,461,123 + AO356_19910 0.52 +0.1
4,461,123 + AO356_19910 0.52 -0.1
4,461,123 + AO356_19910 0.52 +0.4
4,461,124 - AO356_19910 0.52 -0.5
4,461,124 - AO356_19910 0.52 -0.7
4,461,156 + AO356_19910 0.55 +0.3
4,461,173 + AO356_19910 0.56 -0.1
4,461,173 + AO356_19910 0.56 -0.6
4,461,173 + AO356_19910 0.56 -0.6
4,461,173 + AO356_19910 0.56 +0.9
4,461,174 - AO356_19910 0.57 -0.9
4,461,174 - AO356_19910 0.57 +0.1
4,461,236 + AO356_19910 0.62 -1.4
4,461,356 + AO356_19910 0.72 +0.6
4,461,383 + AO356_19910 0.75 +0.5
4,461,384 - AO356_19910 0.75 -0.4
4,461,397 + AO356_19910 0.76 +0.9
4,461,397 + AO356_19910 0.76 +0.1
4,461,397 + AO356_19910 0.76 +1.5
4,461,397 + AO356_19910 0.76 -0.2
4,461,397 + AO356_19910 0.76 +0.1
4,461,397 + AO356_19910 0.76 +2.1
4,461,398 - AO356_19910 0.76 +0.1
4,461,398 - AO356_19910 0.76 -1.1
4,461,398 - AO356_19910 0.76 +0.2
4,461,398 - AO356_19910 0.76 +0.6
4,461,398 - AO356_19910 0.76 +0.6
4,461,398 - AO356_19910 0.76 -0.1
4,461,398 - AO356_19910 0.76 +0.3
4,461,398 - AO356_19910 0.76 +0.7
4,461,403 + AO356_19910 0.77 +0.4
4,461,403 + AO356_19910 0.77 +1.0
4,461,403 + AO356_19910 0.77 +1.0
4,461,403 + AO356_19910 0.77 +0.1
4,461,403 + AO356_19910 0.77 -0.4
4,461,403 + AO356_19910 0.77 +0.0
4,461,403 + AO356_19910 0.77 +0.4
4,461,403 + AO356_19910 0.77 +0.2
4,461,403 + AO356_19910 0.77 -0.4
4,461,404 - AO356_19910 0.77 +0.2
4,461,404 - AO356_19910 0.77 +0.5
4,461,404 - AO356_19910 0.77 +0.6
4,461,404 - AO356_19910 0.77 +0.2
4,461,404 - AO356_19910 0.77 -0.6
4,461,404 - AO356_19910 0.77 +0.2
4,461,454 + AO356_19910 0.81 +0.7
4,461,454 + AO356_19910 0.81 +0.2
4,461,454 + AO356_19910 0.81 +0.9
4,461,454 + AO356_19910 0.81 +0.6
4,461,454 + AO356_19910 0.81 +0.5
4,461,454 + AO356_19910 0.81 +0.5
4,461,455 - AO356_19910 0.81 +1.4
4,461,455 - AO356_19910 0.81 +0.2
4,461,455 - AO356_19910 0.81 +0.8
4,461,455 - AO356_19910 0.81 -1.5
4,461,455 - AO356_19910 0.81 +0.2
4,461,455 - AO356_19910 0.81 -0.9
4,461,455 - AO356_19910 0.81 -0.1
4,461,455 - AO356_19910 0.81 -2.0
4,461,455 - AO356_19910 0.81 +0.8
4,461,455 - AO356_19910 0.81 +0.3
4,461,455 - AO356_19910 0.81 -1.3
4,461,478 + AO356_19910 0.83 -0.3
4,461,478 + AO356_19910 0.83 -0.5
4,461,479 - AO356_19910 0.83 +0.4
4,461,479 - AO356_19910 0.83 +0.7
4,461,560 - +0.6
4,461,560 - +0.5
4,461,599 - -0.3
4,461,599 - +0.3
4,461,602 + -0.4
4,461,603 - +0.8
4,461,603 - -1.3
4,461,603 - +0.5
4,461,644 + +1.2
4,461,645 - -0.5
4,461,645 - +0.4
4,461,652 - +0.0
4,461,652 - +0.1
4,461,652 - +0.3
4,461,702 + +0.8
4,461,702 + -0.1
4,461,702 + -0.4
4,461,702 + +0.4
4,461,702 + -0.4
4,461,702 + +0.5
4,461,702 + +0.3
4,461,702 + -0.1
4,461,702 + +1.2
4,461,702 + +0.7
4,461,703 - -1.7
4,461,703 - -0.1
4,461,703 - +0.5
4,461,703 - -0.0
4,461,703 - -0.4
4,461,703 - -0.2
4,461,703 - +0.9
4,461,703 - +0.1
4,461,758 - +0.5
4,461,758 - +0.2
4,461,758 - -0.8
4,461,892 - AO356_19915 0.15 -0.2
4,461,946 + AO356_19915 0.19 +0.3
4,461,948 + AO356_19915 0.19 +0.3
4,461,949 - AO356_19915 0.19 -1.0
4,461,949 - AO356_19915 0.19 +0.2
4,461,949 - AO356_19915 0.19 +0.2
4,462,188 + AO356_19915 0.35 +1.0
4,462,210 + AO356_19915 0.36 +0.5
4,462,211 - AO356_19915 0.37 -0.4
4,462,263 + AO356_19915 0.40 +0.1
4,462,263 + AO356_19915 0.40 +0.8
4,462,264 - AO356_19915 0.40 -0.1
4,462,264 - AO356_19915 0.40 +0.3
4,462,264 - AO356_19915 0.40 -0.2
4,462,327 + AO356_19915 0.44 -0.6
4,462,351 - AO356_19915 0.46 -0.7
4,462,351 - AO356_19915 0.46 +0.5
4,462,383 - AO356_19915 0.48 -0.7
4,462,482 + AO356_19915 0.55 -0.9
4,462,482 + AO356_19915 0.55 +0.2
4,462,483 - AO356_19915 0.55 -0.2
4,462,483 - AO356_19915 0.55 +0.4
4,462,497 + AO356_19915 0.56 -0.2
4,462,497 + AO356_19915 0.56 +0.8
4,462,554 + AO356_19915 0.60 +0.6
4,462,555 - AO356_19915 0.60 -1.2
4,462,557 + AO356_19915 0.60 +1.0
4,462,558 - AO356_19915 0.60 -0.0
4,462,595 - AO356_19915 0.62 -0.5
4,462,611 - AO356_19915 0.64 +0.4
4,462,651 + AO356_19915 0.66 +0.1
4,462,651 + AO356_19915 0.66 -1.8
4,462,652 - AO356_19915 0.66 -0.2
4,462,652 - AO356_19915 0.66 -0.4
4,462,653 + AO356_19915 0.66 +0.1
4,462,653 + AO356_19915 0.66 +0.8
4,462,653 + AO356_19915 0.66 -0.1
4,462,653 + AO356_19915 0.66 -0.5

Or see this region's nucleotide sequence