Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_17880

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_17870 and AO356_17875 overlap by 14 nucleotidesAO356_17875 and AO356_17880 overlap by 4 nucleotidesAO356_17880 and AO356_17885 are separated by 345 nucleotides AO356_17870: AO356_17870 - hypothetical protein, at 4,032,463 to 4,034,004 _17870 AO356_17875: AO356_17875 - hypothetical protein, at 4,033,991 to 4,034,965 _17875 AO356_17880: AO356_17880 - hypothetical protein, at 4,034,962 to 4,035,687 _17880 AO356_17885: AO356_17885 - exonuclease I, at 4,036,033 to 4,037,469 _17885 Position (kb) 4034 4035 4036Strain fitness (log2 ratio) -2 -1 0 1 2at 4034.031 kb on + strandat 4034.031 kb on + strandat 4034.031 kb on + strandat 4034.032 kb on - strandat 4034.032 kb on - strandat 4034.032 kb on - strandat 4034.032 kb on - strandat 4034.032 kb on - strandat 4034.070 kb on + strandat 4034.070 kb on + strandat 4034.070 kb on + strandat 4034.071 kb on - strandat 4034.071 kb on - strandat 4034.071 kb on - strandat 4034.107 kb on - strand, within AO356_17875at 4034.107 kb on - strand, within AO356_17875at 4034.138 kb on + strand, within AO356_17875at 4034.138 kb on + strand, within AO356_17875at 4034.138 kb on + strand, within AO356_17875at 4034.138 kb on + strand, within AO356_17875at 4034.138 kb on + strand, within AO356_17875at 4034.138 kb on + strand, within AO356_17875at 4034.138 kb on + strand, within AO356_17875at 4034.138 kb on + strand, within AO356_17875at 4034.139 kb on - strand, within AO356_17875at 4034.139 kb on - strand, within AO356_17875at 4034.139 kb on - strand, within AO356_17875at 4034.139 kb on - strand, within AO356_17875at 4034.357 kb on + strand, within AO356_17875at 4034.357 kb on + strand, within AO356_17875at 4034.357 kb on + strand, within AO356_17875at 4034.357 kb on + strand, within AO356_17875at 4034.358 kb on - strand, within AO356_17875at 4034.457 kb on + strand, within AO356_17875at 4034.457 kb on + strand, within AO356_17875at 4034.457 kb on + strand, within AO356_17875at 4034.457 kb on + strand, within AO356_17875at 4034.457 kb on + strand, within AO356_17875at 4034.457 kb on + strand, within AO356_17875at 4034.457 kb on + strand, within AO356_17875at 4034.457 kb on + strand, within AO356_17875at 4034.457 kb on + strand, within AO356_17875at 4034.458 kb on - strand, within AO356_17875at 4034.458 kb on - strand, within AO356_17875at 4034.458 kb on - strand, within AO356_17875at 4034.458 kb on - strand, within AO356_17875at 4034.458 kb on - strand, within AO356_17875at 4034.458 kb on - strand, within AO356_17875at 4034.458 kb on - strand, within AO356_17875at 4034.458 kb on - strand, within AO356_17875at 4034.458 kb on - strand, within AO356_17875at 4034.458 kb on - strand, within AO356_17875at 4034.458 kb on - strand, within AO356_17875at 4034.458 kb on - strand, within AO356_17875at 4034.458 kb on - strand, within AO356_17875at 4034.532 kb on + strand, within AO356_17875at 4034.532 kb on + strand, within AO356_17875at 4034.532 kb on + strand, within AO356_17875at 4034.532 kb on + strand, within AO356_17875at 4034.532 kb on + strand, within AO356_17875at 4034.532 kb on + strand, within AO356_17875at 4034.532 kb on + strand, within AO356_17875at 4034.532 kb on + strand, within AO356_17875at 4034.532 kb on + strand, within AO356_17875at 4034.532 kb on + strand, within AO356_17875at 4034.532 kb on + strand, within AO356_17875at 4034.532 kb on + strand, within AO356_17875at 4034.532 kb on + strand, within AO356_17875at 4034.533 kb on - strand, within AO356_17875at 4034.533 kb on - strand, within AO356_17875at 4034.533 kb on - strand, within AO356_17875at 4034.533 kb on - strand, within AO356_17875at 4034.533 kb on - strand, within AO356_17875at 4034.533 kb on - strand, within AO356_17875at 4034.533 kb on - strand, within AO356_17875at 4034.533 kb on - strand, within AO356_17875at 4034.533 kb on - strand, within AO356_17875at 4034.533 kb on - strand, within AO356_17875at 4034.533 kb on - strand, within AO356_17875at 4034.533 kb on - strand, within AO356_17875at 4034.577 kb on + strand, within AO356_17875at 4034.578 kb on - strand, within AO356_17875at 4034.578 kb on - strand, within AO356_17875at 4034.578 kb on - strand, within AO356_17875at 4034.578 kb on - strand, within AO356_17875at 4034.578 kb on - strand, within AO356_17875at 4034.598 kb on + strand, within AO356_17875at 4034.599 kb on - strand, within AO356_17875at 4034.599 kb on - strand, within AO356_17875at 4034.599 kb on - strand, within AO356_17875at 4034.599 kb on - strand, within AO356_17875at 4034.599 kb on - strand, within AO356_17875at 4034.599 kb on - strand, within AO356_17875at 4034.599 kb on - strand, within AO356_17875at 4034.599 kb on - strand, within AO356_17875at 4034.702 kb on - strand, within AO356_17875at 4034.742 kb on + strand, within AO356_17875at 4034.743 kb on - strand, within AO356_17875at 4034.802 kb on + strand, within AO356_17875at 4034.803 kb on - strand, within AO356_17875at 4035.152 kb on - strand, within AO356_17880at 4035.282 kb on - strand, within AO356_17880at 4035.415 kb on + strand, within AO356_17880at 4035.416 kb on - strand, within AO356_17880at 4035.434 kb on + strand, within AO356_17880at 4035.434 kb on + strand, within AO356_17880at 4035.434 kb on + strand, within AO356_17880at 4035.434 kb on + strand, within AO356_17880at 4035.434 kb on + strand, within AO356_17880at 4035.435 kb on - strand, within AO356_17880at 4035.435 kb on - strand, within AO356_17880at 4035.435 kb on - strand, within AO356_17880at 4035.435 kb on - strand, within AO356_17880at 4035.535 kb on + strand, within AO356_17880at 4035.536 kb on - strand, within AO356_17880at 4035.723 kb on + strandat 4035.723 kb on + strandat 4035.723 kb on + strandat 4035.723 kb on + strandat 4035.723 kb on + strandat 4035.723 kb on + strandat 4035.723 kb on + strandat 4035.723 kb on + strandat 4035.724 kb on - strandat 4035.724 kb on - strandat 4035.738 kb on + strandat 4035.738 kb on + strandat 4035.738 kb on + strandat 4035.753 kb on - strandat 4035.854 kb on - strandat 4035.920 kb on + strandat 4035.920 kb on + strandat 4035.920 kb on + strandat 4035.920 kb on + strandat 4035.920 kb on + strandat 4035.920 kb on + strandat 4035.920 kb on + strandat 4035.921 kb on - strandat 4035.921 kb on - strandat 4035.921 kb on - strandat 4035.921 kb on - strandat 4035.921 kb on - strandat 4035.921 kb on - strandat 4035.921 kb on - strandat 4035.921 kb on - strandat 4035.921 kb on - strandat 4035.921 kb on - strandat 4035.934 kb on + strandat 4035.934 kb on + strandat 4035.935 kb on - strandat 4035.935 kb on - strandat 4035.935 kb on - strandat 4035.935 kb on - strandat 4035.935 kb on - strandat 4036.000 kb on - strandat 4036.159 kb on + strandat 4036.159 kb on + strandat 4036.159 kb on + strandat 4036.160 kb on - strandat 4036.300 kb on - strand, within AO356_17885at 4036.316 kb on - strand, within AO356_17885at 4036.316 kb on - strand, within AO356_17885at 4036.568 kb on + strand, within AO356_17885at 4036.568 kb on + strand, within AO356_17885at 4036.569 kb on - strand, within AO356_17885at 4036.569 kb on - strand, within AO356_17885at 4036.622 kb on - strand, within AO356_17885at 4036.622 kb on - strand, within AO356_17885at 4036.622 kb on - strand, within AO356_17885

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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4,034,031 + -0.7
4,034,031 + -0.7
4,034,031 + -1.4
4,034,032 - -0.4
4,034,032 - -1.1
4,034,032 - -0.0
4,034,032 - -0.6
4,034,032 - +0.3
4,034,070 + -0.5
4,034,070 + +0.8
4,034,070 + +0.2
4,034,071 - -0.1
4,034,071 - +0.0
4,034,071 - +0.2
4,034,107 - AO356_17875 0.12 +0.5
4,034,107 - AO356_17875 0.12 -0.3
4,034,138 + AO356_17875 0.15 +0.0
4,034,138 + AO356_17875 0.15 +0.0
4,034,138 + AO356_17875 0.15 +0.5
4,034,138 + AO356_17875 0.15 -0.1
4,034,138 + AO356_17875 0.15 -0.4
4,034,138 + AO356_17875 0.15 +0.7
4,034,138 + AO356_17875 0.15 +1.2
4,034,138 + AO356_17875 0.15 +1.6
4,034,139 - AO356_17875 0.15 -0.4
4,034,139 - AO356_17875 0.15 +0.5
4,034,139 - AO356_17875 0.15 +0.5
4,034,139 - AO356_17875 0.15 +0.1
4,034,357 + AO356_17875 0.38 +0.0
4,034,357 + AO356_17875 0.38 +0.2
4,034,357 + AO356_17875 0.38 -0.1
4,034,357 + AO356_17875 0.38 +0.4
4,034,358 - AO356_17875 0.38 -0.3
4,034,457 + AO356_17875 0.48 -0.8
4,034,457 + AO356_17875 0.48 -0.4
4,034,457 + AO356_17875 0.48 -0.3
4,034,457 + AO356_17875 0.48 +0.8
4,034,457 + AO356_17875 0.48 -1.6
4,034,457 + AO356_17875 0.48 -0.7
4,034,457 + AO356_17875 0.48 -0.2
4,034,457 + AO356_17875 0.48 -0.5
4,034,457 + AO356_17875 0.48 -0.4
4,034,458 - AO356_17875 0.48 -1.3
4,034,458 - AO356_17875 0.48 -0.8
4,034,458 - AO356_17875 0.48 -0.3
4,034,458 - AO356_17875 0.48 +0.2
4,034,458 - AO356_17875 0.48 -0.7
4,034,458 - AO356_17875 0.48 -0.4
4,034,458 - AO356_17875 0.48 -1.3
4,034,458 - AO356_17875 0.48 +0.5
4,034,458 - AO356_17875 0.48 +0.9
4,034,458 - AO356_17875 0.48 +0.6
4,034,458 - AO356_17875 0.48 +0.3
4,034,458 - AO356_17875 0.48 -0.3
4,034,458 - AO356_17875 0.48 +0.1
4,034,532 + AO356_17875 0.55 +0.0
4,034,532 + AO356_17875 0.55 +0.5
4,034,532 + AO356_17875 0.55 +0.9
4,034,532 + AO356_17875 0.55 -0.7
4,034,532 + AO356_17875 0.55 -0.8
4,034,532 + AO356_17875 0.55 +0.2
4,034,532 + AO356_17875 0.55 +0.1
4,034,532 + AO356_17875 0.55 +0.8
4,034,532 + AO356_17875 0.55 +0.5
4,034,532 + AO356_17875 0.55 -1.6
4,034,532 + AO356_17875 0.55 +0.4
4,034,532 + AO356_17875 0.55 -0.3
4,034,532 + AO356_17875 0.55 -0.9
4,034,533 - AO356_17875 0.56 -0.7
4,034,533 - AO356_17875 0.56 -0.6
4,034,533 - AO356_17875 0.56 +1.6
4,034,533 - AO356_17875 0.56 +0.0
4,034,533 - AO356_17875 0.56 -0.8
4,034,533 - AO356_17875 0.56 +0.4
4,034,533 - AO356_17875 0.56 -0.0
4,034,533 - AO356_17875 0.56 -0.2
4,034,533 - AO356_17875 0.56 -0.2
4,034,533 - AO356_17875 0.56 +0.3
4,034,533 - AO356_17875 0.56 -0.4
4,034,533 - AO356_17875 0.56 +0.0
4,034,577 + AO356_17875 0.60 +0.4
4,034,578 - AO356_17875 0.60 -0.4
4,034,578 - AO356_17875 0.60 +1.2
4,034,578 - AO356_17875 0.60 -0.5
4,034,578 - AO356_17875 0.60 -0.4
4,034,578 - AO356_17875 0.60 -0.1
4,034,598 + AO356_17875 0.62 +0.4
4,034,599 - AO356_17875 0.62 -0.3
4,034,599 - AO356_17875 0.62 +0.4
4,034,599 - AO356_17875 0.62 +0.3
4,034,599 - AO356_17875 0.62 +0.8
4,034,599 - AO356_17875 0.62 -1.8
4,034,599 - AO356_17875 0.62 -0.6
4,034,599 - AO356_17875 0.62 -1.0
4,034,599 - AO356_17875 0.62 +0.0
4,034,702 - AO356_17875 0.73 +1.6
4,034,742 + AO356_17875 0.77 +0.2
4,034,743 - AO356_17875 0.77 -1.0
4,034,802 + AO356_17875 0.83 -0.3
4,034,803 - AO356_17875 0.83 +0.5
4,035,152 - AO356_17880 0.26 +0.6
4,035,282 - AO356_17880 0.44 +1.0
4,035,415 + AO356_17880 0.62 +0.1
4,035,416 - AO356_17880 0.63 -0.5
4,035,434 + AO356_17880 0.65 -0.5
4,035,434 + AO356_17880 0.65 -0.2
4,035,434 + AO356_17880 0.65 -1.1
4,035,434 + AO356_17880 0.65 +0.4
4,035,434 + AO356_17880 0.65 -0.3
4,035,435 - AO356_17880 0.65 +0.5
4,035,435 - AO356_17880 0.65 +0.2
4,035,435 - AO356_17880 0.65 -0.7
4,035,435 - AO356_17880 0.65 -1.4
4,035,535 + AO356_17880 0.79 +0.8
4,035,536 - AO356_17880 0.79 -0.5
4,035,723 + -0.0
4,035,723 + +0.4
4,035,723 + +0.1
4,035,723 + +0.0
4,035,723 + +1.2
4,035,723 + -0.5
4,035,723 + -0.1
4,035,723 + +1.3
4,035,724 - +0.2
4,035,724 - -0.6
4,035,738 + +0.0
4,035,738 + +0.0
4,035,738 + -0.7
4,035,753 - -0.6
4,035,854 - +0.2
4,035,920 + -0.9
4,035,920 + -0.1
4,035,920 + -0.2
4,035,920 + -0.2
4,035,920 + +0.9
4,035,920 + +0.1
4,035,920 + +0.8
4,035,921 - +0.3
4,035,921 - -0.9
4,035,921 - -0.1
4,035,921 - -1.2
4,035,921 - -0.7
4,035,921 - +0.5
4,035,921 - -0.5
4,035,921 - -0.1
4,035,921 - +1.9
4,035,921 - +0.1
4,035,934 + -0.4
4,035,934 + +1.1
4,035,935 - -0.8
4,035,935 - -0.1
4,035,935 - +0.6
4,035,935 - -0.1
4,035,935 - -1.2
4,036,000 - -0.3
4,036,159 + -1.1
4,036,159 + +0.7
4,036,159 + +0.2
4,036,160 - -0.2
4,036,300 - AO356_17885 0.19 +1.9
4,036,316 - AO356_17885 0.20 +0.6
4,036,316 - AO356_17885 0.20 +0.0
4,036,568 + AO356_17885 0.37 -0.4
4,036,568 + AO356_17885 0.37 +0.2
4,036,569 - AO356_17885 0.37 +0.6
4,036,569 - AO356_17885 0.37 -0.1
4,036,622 - AO356_17885 0.41 -1.7
4,036,622 - AO356_17885 0.41 +0.3
4,036,622 - AO356_17885 0.41 -0.1

Or see this region's nucleotide sequence