Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_05865

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_05860 and AO356_05865 are separated by 669 nucleotidesAO356_05865 and AO356_05870 are separated by 536 nucleotides AO356_05860: AO356_05860 - hypothetical protein, at 1,297,337 to 1,297,981 _05860 AO356_05865: AO356_05865 - transcriptional regulator, at 1,298,651 to 1,299,385 _05865 AO356_05870: AO356_05870 - hypothetical protein, at 1,299,922 to 1,300,263 _05870 Position (kb) 1298 1299 1300Strain fitness (log2 ratio) -2 -1 0 1at 1297.792 kb on - strand, within AO356_05860at 1297.792 kb on - strand, within AO356_05860at 1297.792 kb on - strand, within AO356_05860at 1297.792 kb on - strand, within AO356_05860at 1297.872 kb on + strand, within AO356_05860at 1297.872 kb on + strand, within AO356_05860at 1297.872 kb on + strand, within AO356_05860at 1297.872 kb on + strand, within AO356_05860at 1297.872 kb on + strand, within AO356_05860at 1297.873 kb on - strand, within AO356_05860at 1297.873 kb on - strand, within AO356_05860at 1297.873 kb on - strand, within AO356_05860at 1297.873 kb on - strand, within AO356_05860at 1297.929 kb on - strandat 1297.973 kb on + strandat 1297.988 kb on + strandat 1298.011 kb on - strandat 1298.026 kb on + strandat 1298.026 kb on + strandat 1298.026 kb on + strandat 1298.026 kb on + strandat 1298.273 kb on + strandat 1298.374 kb on + strandat 1298.374 kb on + strandat 1298.375 kb on - strandat 1298.449 kb on - strandat 1298.449 kb on - strandat 1298.539 kb on + strandat 1298.634 kb on - strandat 1298.634 kb on - strandat 1298.661 kb on + strandat 1298.661 kb on + strandat 1298.662 kb on - strandat 1298.727 kb on + strand, within AO356_05865at 1299.436 kb on - strandat 1299.440 kb on - strandat 1299.566 kb on + strandat 1299.621 kb on + strandat 1299.621 kb on + strandat 1299.621 kb on + strandat 1299.622 kb on - strandat 1299.643 kb on + strandat 1299.643 kb on + strandat 1299.644 kb on - strandat 1299.729 kb on - strandat 1299.773 kb on + strandat 1299.773 kb on + strandat 1299.774 kb on - strandat 1299.774 kb on - strandat 1299.774 kb on - strandat 1299.774 kb on - strandat 1299.774 kb on - strandat 1299.780 kb on - strandat 1299.780 kb on - strandat 1299.780 kb on - strandat 1299.797 kb on + strandat 1299.797 kb on + strandat 1299.797 kb on + strandat 1299.798 kb on - strandat 1299.798 kb on - strandat 1299.798 kb on - strandat 1299.798 kb on - strandat 1299.851 kb on + strandat 1299.860 kb on + strandat 1299.918 kb on + strandat 1299.918 kb on + strandat 1299.918 kb on + strandat 1299.918 kb on + strandat 1299.918 kb on + strandat 1299.918 kb on + strandat 1299.918 kb on + strandat 1299.918 kb on + strandat 1299.919 kb on - strandat 1299.919 kb on - strandat 1299.919 kb on - strandat 1299.919 kb on - strandat 1299.919 kb on - strandat 1300.009 kb on + strand, within AO356_05870at 1300.009 kb on + strand, within AO356_05870at 1300.009 kb on + strand, within AO356_05870at 1300.009 kb on + strand, within AO356_05870at 1300.009 kb on + strand, within AO356_05870at 1300.010 kb on - strand, within AO356_05870at 1300.010 kb on - strand, within AO356_05870at 1300.012 kb on + strand, within AO356_05870at 1300.012 kb on + strand, within AO356_05870at 1300.012 kb on + strand, within AO356_05870at 1300.013 kb on - strand, within AO356_05870at 1300.013 kb on - strand, within AO356_05870at 1300.013 kb on - strand, within AO356_05870at 1300.013 kb on - strand, within AO356_05870at 1300.013 kb on - strand, within AO356_05870at 1300.013 kb on - strand, within AO356_05870at 1300.183 kb on - strand, within AO356_05870at 1300.183 kb on - strand, within AO356_05870at 1300.262 kb on - strandat 1300.262 kb on - strandat 1300.285 kb on + strandat 1300.286 kb on - strandat 1300.343 kb on + strandat 1300.344 kb on - strandat 1300.344 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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1,297,792 - AO356_05860 0.71 -1.3
1,297,792 - AO356_05860 0.71 -0.2
1,297,792 - AO356_05860 0.71 +0.4
1,297,792 - AO356_05860 0.71 -0.7
1,297,872 + AO356_05860 0.83 -1.7
1,297,872 + AO356_05860 0.83 -0.1
1,297,872 + AO356_05860 0.83 +0.4
1,297,872 + AO356_05860 0.83 +0.7
1,297,872 + AO356_05860 0.83 +0.7
1,297,873 - AO356_05860 0.83 -1.8
1,297,873 - AO356_05860 0.83 -1.1
1,297,873 - AO356_05860 0.83 -0.2
1,297,873 - AO356_05860 0.83 -0.5
1,297,929 - -0.1
1,297,973 + +0.3
1,297,988 + -0.6
1,298,011 - -0.7
1,298,026 + +0.5
1,298,026 + +0.0
1,298,026 + -0.8
1,298,026 + -0.3
1,298,273 + -0.7
1,298,374 + +0.6
1,298,374 + -0.3
1,298,375 - +0.1
1,298,449 - -0.1
1,298,449 - +0.4
1,298,539 + +0.3
1,298,634 - -0.4
1,298,634 - -1.8
1,298,661 + -0.5
1,298,661 + -0.3
1,298,662 - +0.7
1,298,727 + AO356_05865 0.10 +0.1
1,299,436 - -0.6
1,299,440 - +0.2
1,299,566 + +0.8
1,299,621 + -0.1
1,299,621 + -0.6
1,299,621 + +1.6
1,299,622 - +1.6
1,299,643 + +0.6
1,299,643 + +0.9
1,299,644 - +0.4
1,299,729 - +0.5
1,299,773 + +0.2
1,299,773 + -0.2
1,299,774 - -0.3
1,299,774 - +0.0
1,299,774 - +1.0
1,299,774 - +0.2
1,299,774 - -0.4
1,299,780 - +0.2
1,299,780 - +0.4
1,299,780 - +1.1
1,299,797 + +0.2
1,299,797 + +0.1
1,299,797 + -1.2
1,299,798 - -0.2
1,299,798 - +0.9
1,299,798 - +0.4
1,299,798 - +0.6
1,299,851 + -1.7
1,299,860 + -1.5
1,299,918 + +0.1
1,299,918 + -0.0
1,299,918 + +1.3
1,299,918 + +0.1
1,299,918 + -0.3
1,299,918 + +0.1
1,299,918 + +0.0
1,299,918 + -0.4
1,299,919 - +0.5
1,299,919 - +0.3
1,299,919 - +0.4
1,299,919 - +0.5
1,299,919 - +0.6
1,300,009 + AO356_05870 0.25 -0.8
1,300,009 + AO356_05870 0.25 +0.4
1,300,009 + AO356_05870 0.25 -0.5
1,300,009 + AO356_05870 0.25 +0.6
1,300,009 + AO356_05870 0.25 -1.2
1,300,010 - AO356_05870 0.26 +1.0
1,300,010 - AO356_05870 0.26 +1.2
1,300,012 + AO356_05870 0.26 -0.2
1,300,012 + AO356_05870 0.26 +0.0
1,300,012 + AO356_05870 0.26 -0.2
1,300,013 - AO356_05870 0.27 +0.1
1,300,013 - AO356_05870 0.27 +0.2
1,300,013 - AO356_05870 0.27 -0.3
1,300,013 - AO356_05870 0.27 +1.2
1,300,013 - AO356_05870 0.27 -0.2
1,300,013 - AO356_05870 0.27 +0.8
1,300,183 - AO356_05870 0.76 -0.4
1,300,183 - AO356_05870 0.76 +0.1
1,300,262 - +0.5
1,300,262 - +0.0
1,300,285 + +0.0
1,300,286 - -0.7
1,300,343 + -0.7
1,300,344 - +0.1
1,300,344 - -0.8

Or see this region's nucleotide sequence