Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_005254

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE53_005253 and ABIE53_005254 are separated by 24 nucleotidesABIE53_005254 and ABIE53_005255 are separated by 109 nucleotidesABIE53_005255 and ABIE53_005256 overlap by 20 nucleotides ABIE53_005253: ABIE53_005253 - carbamoyltransferase, at 1,510,439 to 1,512,184 _005253 ABIE53_005254: ABIE53_005254 - lipopolysaccharide heptosyltransferase II, at 1,512,209 to 1,514,101 _005254 ABIE53_005255: ABIE53_005255 - hypothetical protein, at 1,514,211 to 1,514,381 _005255 ABIE53_005256: ABIE53_005256 - D-inositol-3-phosphate glycosyltransferase, at 1,514,362 to 1,515,510 _005256 Position (kb) 1512 1513 1514 1515Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1511.419 kb on + strand, within ABIE53_005253at 1511.419 kb on + strand, within ABIE53_005253at 1511.419 kb on + strand, within ABIE53_005253at 1511.419 kb on + strand, within ABIE53_005253at 1511.421 kb on + strand, within ABIE53_005253at 1511.422 kb on - strand, within ABIE53_005253at 1511.469 kb on + strand, within ABIE53_005253at 1511.469 kb on + strand, within ABIE53_005253at 1511.469 kb on + strand, within ABIE53_005253at 1511.470 kb on - strand, within ABIE53_005253at 1511.470 kb on - strand, within ABIE53_005253at 1511.509 kb on - strand, within ABIE53_005253at 1511.556 kb on + strand, within ABIE53_005253at 1511.557 kb on - strand, within ABIE53_005253at 1511.602 kb on + strand, within ABIE53_005253at 1511.603 kb on - strand, within ABIE53_005253at 1511.686 kb on - strand, within ABIE53_005253at 1511.686 kb on - strand, within ABIE53_005253at 1511.686 kb on - strand, within ABIE53_005253at 1511.833 kb on + strand, within ABIE53_005253at 1511.834 kb on - strand, within ABIE53_005253at 1511.835 kb on + strand, within ABIE53_005253at 1511.835 kb on + strand, within ABIE53_005253at 1511.835 kb on + strand, within ABIE53_005253at 1511.835 kb on + strand, within ABIE53_005253at 1511.836 kb on - strand, within ABIE53_005253at 1511.836 kb on - strand, within ABIE53_005253at 1511.836 kb on - strand, within ABIE53_005253at 1511.836 kb on - strand, within ABIE53_005253at 1511.836 kb on - strand, within ABIE53_005253at 1511.836 kb on - strand, within ABIE53_005253at 1511.836 kb on - strand, within ABIE53_005253at 1511.967 kb on + strand, within ABIE53_005253at 1511.968 kb on - strand, within ABIE53_005253at 1512.017 kb on + strandat 1512.156 kb on + strandat 1512.178 kb on + strandat 1512.178 kb on + strandat 1512.178 kb on + strandat 1512.179 kb on - strandat 1512.180 kb on + strandat 1512.180 kb on + strandat 1512.180 kb on + strandat 1512.180 kb on + strandat 1512.180 kb on + strandat 1512.180 kb on + strandat 1512.181 kb on - strandat 1512.181 kb on - strandat 1512.181 kb on - strandat 1512.181 kb on - strandat 1512.181 kb on - strandat 1512.181 kb on - strandat 1512.181 kb on - strandat 1512.489 kb on + strand, within ABIE53_005254at 1512.544 kb on + strand, within ABIE53_005254at 1512.613 kb on + strand, within ABIE53_005254at 1512.614 kb on - strand, within ABIE53_005254at 1512.614 kb on - strand, within ABIE53_005254at 1512.614 kb on - strand, within ABIE53_005254at 1512.614 kb on - strand, within ABIE53_005254at 1512.614 kb on - strand, within ABIE53_005254at 1512.703 kb on + strand, within ABIE53_005254at 1512.704 kb on - strand, within ABIE53_005254at 1512.704 kb on - strand, within ABIE53_005254at 1512.797 kb on + strand, within ABIE53_005254at 1512.797 kb on + strand, within ABIE53_005254at 1512.798 kb on - strand, within ABIE53_005254at 1512.798 kb on - strand, within ABIE53_005254at 1512.853 kb on + strand, within ABIE53_005254at 1512.853 kb on + strand, within ABIE53_005254at 1512.853 kb on + strand, within ABIE53_005254at 1512.853 kb on + strand, within ABIE53_005254at 1512.854 kb on - strand, within ABIE53_005254at 1512.854 kb on - strand, within ABIE53_005254at 1513.038 kb on + strand, within ABIE53_005254at 1513.039 kb on - strand, within ABIE53_005254at 1513.087 kb on - strand, within ABIE53_005254at 1513.087 kb on - strand, within ABIE53_005254at 1513.087 kb on - strand, within ABIE53_005254at 1513.087 kb on - strand, within ABIE53_005254at 1513.122 kb on + strand, within ABIE53_005254at 1513.269 kb on + strand, within ABIE53_005254at 1513.312 kb on + strand, within ABIE53_005254at 1513.312 kb on + strand, within ABIE53_005254at 1513.312 kb on + strand, within ABIE53_005254at 1513.312 kb on + strand, within ABIE53_005254at 1513.313 kb on - strand, within ABIE53_005254at 1513.313 kb on - strand, within ABIE53_005254at 1513.575 kb on + strand, within ABIE53_005254at 1513.576 kb on - strand, within ABIE53_005254at 1513.576 kb on - strand, within ABIE53_005254at 1513.576 kb on - strand, within ABIE53_005254at 1513.578 kb on - strand, within ABIE53_005254at 1513.619 kb on + strand, within ABIE53_005254at 1513.619 kb on + strand, within ABIE53_005254at 1513.619 kb on + strand, within ABIE53_005254at 1513.620 kb on - strand, within ABIE53_005254at 1513.620 kb on - strand, within ABIE53_005254at 1514.043 kb on + strandat 1514.043 kb on + strandat 1514.044 kb on - strandat 1514.044 kb on - strandat 1514.044 kb on - strandat 1514.213 kb on - strandat 1514.303 kb on + strand, within ABIE53_005255at 1514.304 kb on - strand, within ABIE53_005255at 1514.305 kb on + strand, within ABIE53_005255at 1514.305 kb on + strand, within ABIE53_005255at 1514.305 kb on + strand, within ABIE53_005255at 1514.305 kb on + strand, within ABIE53_005255at 1514.306 kb on - strand, within ABIE53_005255at 1514.306 kb on - strand, within ABIE53_005255at 1514.306 kb on - strand, within ABIE53_005255at 1514.306 kb on - strand, within ABIE53_005255at 1514.306 kb on - strand, within ABIE53_005255at 1514.306 kb on - strand, within ABIE53_005255at 1514.488 kb on + strand, within ABIE53_005256at 1514.606 kb on + strand, within ABIE53_005256at 1514.606 kb on + strand, within ABIE53_005256at 1514.606 kb on + strand, within ABIE53_005256at 1514.607 kb on - strand, within ABIE53_005256at 1514.612 kb on + strand, within ABIE53_005256at 1514.750 kb on + strand, within ABIE53_005256at 1514.969 kb on + strand, within ABIE53_005256at 1514.970 kb on - strand, within ABIE53_005256at 1515.014 kb on - strand, within ABIE53_005256at 1515.014 kb on - strand, within ABIE53_005256at 1515.091 kb on + strand, within ABIE53_005256at 1515.092 kb on - strand, within ABIE53_005256at 1515.092 kb on - strand, within ABIE53_005256

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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1,511,419 + ABIE53_005253 0.56 +2.6
1,511,419 + ABIE53_005253 0.56 +1.3
1,511,419 + ABIE53_005253 0.56 +3.0
1,511,419 + ABIE53_005253 0.56 +0.3
1,511,421 + ABIE53_005253 0.56 -0.9
1,511,422 - ABIE53_005253 0.56 +0.1
1,511,469 + ABIE53_005253 0.59 -0.4
1,511,469 + ABIE53_005253 0.59 -0.2
1,511,469 + ABIE53_005253 0.59 -0.6
1,511,470 - ABIE53_005253 0.59 -0.1
1,511,470 - ABIE53_005253 0.59 -0.4
1,511,509 - ABIE53_005253 0.61 +0.6
1,511,556 + ABIE53_005253 0.64 +0.3
1,511,557 - ABIE53_005253 0.64 +0.3
1,511,602 + ABIE53_005253 0.67 -0.9
1,511,603 - ABIE53_005253 0.67 -1.6
1,511,686 - ABIE53_005253 0.71 -0.7
1,511,686 - ABIE53_005253 0.71 +0.3
1,511,686 - ABIE53_005253 0.71 -0.7
1,511,833 + ABIE53_005253 0.80 -2.4
1,511,834 - ABIE53_005253 0.80 +0.9
1,511,835 + ABIE53_005253 0.80 -0.1
1,511,835 + ABIE53_005253 0.80 +0.3
1,511,835 + ABIE53_005253 0.80 -0.5
1,511,835 + ABIE53_005253 0.80 -0.1
1,511,836 - ABIE53_005253 0.80 -0.5
1,511,836 - ABIE53_005253 0.80 -1.1
1,511,836 - ABIE53_005253 0.80 +0.7
1,511,836 - ABIE53_005253 0.80 -0.1
1,511,836 - ABIE53_005253 0.80 -1.1
1,511,836 - ABIE53_005253 0.80 +1.9
1,511,836 - ABIE53_005253 0.80 -0.4
1,511,967 + ABIE53_005253 0.88 -0.3
1,511,968 - ABIE53_005253 0.88 -0.4
1,512,017 + +0.7
1,512,156 + +0.5
1,512,178 + -0.6
1,512,178 + -1.2
1,512,178 + +1.1
1,512,179 - -1.9
1,512,180 + -0.9
1,512,180 + -0.7
1,512,180 + +0.4
1,512,180 + -0.9
1,512,180 + -0.1
1,512,180 + +0.4
1,512,181 - +1.6
1,512,181 - -2.0
1,512,181 - +0.9
1,512,181 - -0.4
1,512,181 - -0.1
1,512,181 - -0.5
1,512,181 - -0.9
1,512,489 + ABIE53_005254 0.15 -1.2
1,512,544 + ABIE53_005254 0.18 -0.6
1,512,613 + ABIE53_005254 0.21 -1.4
1,512,614 - ABIE53_005254 0.21 -1.7
1,512,614 - ABIE53_005254 0.21 -1.1
1,512,614 - ABIE53_005254 0.21 +0.1
1,512,614 - ABIE53_005254 0.21 -1.8
1,512,614 - ABIE53_005254 0.21 +1.9
1,512,703 + ABIE53_005254 0.26 -1.2
1,512,704 - ABIE53_005254 0.26 -0.5
1,512,704 - ABIE53_005254 0.26 -0.5
1,512,797 + ABIE53_005254 0.31 -1.1
1,512,797 + ABIE53_005254 0.31 -0.7
1,512,798 - ABIE53_005254 0.31 +2.5
1,512,798 - ABIE53_005254 0.31 +2.5
1,512,853 + ABIE53_005254 0.34 -1.6
1,512,853 + ABIE53_005254 0.34 +0.6
1,512,853 + ABIE53_005254 0.34 -0.2
1,512,853 + ABIE53_005254 0.34 +0.9
1,512,854 - ABIE53_005254 0.34 -1.1
1,512,854 - ABIE53_005254 0.34 +1.9
1,513,038 + ABIE53_005254 0.44 -1.2
1,513,039 - ABIE53_005254 0.44 -0.1
1,513,087 - ABIE53_005254 0.46 -2.1
1,513,087 - ABIE53_005254 0.46 -0.4
1,513,087 - ABIE53_005254 0.46 -1.4
1,513,087 - ABIE53_005254 0.46 -1.1
1,513,122 + ABIE53_005254 0.48 +0.9
1,513,269 + ABIE53_005254 0.56 +0.3
1,513,312 + ABIE53_005254 0.58 -0.4
1,513,312 + ABIE53_005254 0.58 -0.4
1,513,312 + ABIE53_005254 0.58 -1.3
1,513,312 + ABIE53_005254 0.58 -0.5
1,513,313 - ABIE53_005254 0.58 -0.4
1,513,313 - ABIE53_005254 0.58 -0.1
1,513,575 + ABIE53_005254 0.72 -0.9
1,513,576 - ABIE53_005254 0.72 +0.9
1,513,576 - ABIE53_005254 0.72 +0.3
1,513,576 - ABIE53_005254 0.72 +0.2
1,513,578 - ABIE53_005254 0.72 -0.7
1,513,619 + ABIE53_005254 0.74 -0.6
1,513,619 + ABIE53_005254 0.74 -2.0
1,513,619 + ABIE53_005254 0.74 -0.1
1,513,620 - ABIE53_005254 0.75 -0.1
1,513,620 - ABIE53_005254 0.75 -0.9
1,514,043 + +0.3
1,514,043 + -0.4
1,514,044 - -1.3
1,514,044 - -2.3
1,514,044 - -0.2
1,514,213 - +0.6
1,514,303 + ABIE53_005255 0.54 -0.1
1,514,304 - ABIE53_005255 0.54 -0.5
1,514,305 + ABIE53_005255 0.55 +0.7
1,514,305 + ABIE53_005255 0.55 +1.3
1,514,305 + ABIE53_005255 0.55 -0.6
1,514,305 + ABIE53_005255 0.55 +0.5
1,514,306 - ABIE53_005255 0.56 +2.5
1,514,306 - ABIE53_005255 0.56 +0.3
1,514,306 - ABIE53_005255 0.56 +0.9
1,514,306 - ABIE53_005255 0.56 +0.1
1,514,306 - ABIE53_005255 0.56 +1.3
1,514,306 - ABIE53_005255 0.56 -0.2
1,514,488 + ABIE53_005256 0.11 +0.6
1,514,606 + ABIE53_005256 0.21 +2.9
1,514,606 + ABIE53_005256 0.21 -0.1
1,514,606 + ABIE53_005256 0.21 +1.1
1,514,607 - ABIE53_005256 0.21 +0.0
1,514,612 + ABIE53_005256 0.22 +1.0
1,514,750 + ABIE53_005256 0.34 +3.3
1,514,969 + ABIE53_005256 0.53 +2.5
1,514,970 - ABIE53_005256 0.53 +0.2
1,515,014 - ABIE53_005256 0.57 +3.2
1,515,014 - ABIE53_005256 0.57 +0.0
1,515,091 + ABIE53_005256 0.63 -0.4
1,515,092 - ABIE53_005256 0.64 +1.9
1,515,092 - ABIE53_005256 0.64 +2.5

Or see this region's nucleotide sequence