Strain Fitness in Sinorhizobium meliloti 1021 around SMc03801

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03902 and SMc03800 are separated by 91 nucleotidesSMc03800 and SMc03801 are separated by 59 nucleotidesSMc03801 and SMc03802 are separated by 144 nucleotidesSMc03802 and SMc03803 are separated by 8 nucleotides SMc03902: SMc03902 - tRNA-Gly, at 3,465,466 to 3,465,540 SMc03902 SMc03800: SMc03800 - hypothetical protein, at 3,465,632 to 3,466,306 SMc03800 SMc03801: SMc03801 - thioredoxin protein, at 3,466,366 to 3,467,358 SMc03801 SMc03802: SMc03802 - hypothetical protein, at 3,467,503 to 3,468,183 SMc03802 SMc03803: SMc03803 - hypothetical protein, at 3,468,192 to 3,468,380 SMc03803 Position (kb) 3466 3467 3468Strain fitness (log2 ratio) -1 0 1at 3465.754 kb on + strand, within SMc03800at 3465.755 kb on - strand, within SMc03800at 3465.977 kb on + strand, within SMc03800at 3466.089 kb on - strand, within SMc03800at 3466.309 kb on + strandat 3466.309 kb on + strandat 3466.309 kb on + strandat 3466.310 kb on - strandat 3466.310 kb on - strandat 3466.387 kb on + strandat 3466.388 kb on - strandat 3466.515 kb on + strand, within SMc03801at 3466.908 kb on - strand, within SMc03801at 3466.964 kb on - strand, within SMc03801at 3467.291 kb on + strandat 3467.356 kb on + strandat 3467.525 kb on - strandat 3467.610 kb on + strand, within SMc03802at 3467.611 kb on - strand, within SMc03802at 3467.611 kb on - strand, within SMc03802at 3467.629 kb on + strandat 3467.748 kb on - strand, within SMc03802at 3467.797 kb on + strand, within SMc03802at 3467.797 kb on + strand, within SMc03802at 3467.797 kb on + strand, within SMc03802at 3468.022 kb on - strand, within SMc03802at 3468.172 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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3,465,754 + SMc03800 0.18 +0.2
3,465,755 - SMc03800 0.18 +0.2
3,465,977 + SMc03800 0.51 +0.3
3,466,089 - SMc03800 0.68 -0.2
3,466,309 + -0.1
3,466,309 + +0.2
3,466,309 + -0.1
3,466,310 - -0.4
3,466,310 - -0.2
3,466,387 + -0.1
3,466,388 - -0.2
3,466,515 + SMc03801 0.15 +0.6
3,466,908 - SMc03801 0.55 +0.4
3,466,964 - SMc03801 0.60 -0.1
3,467,291 + -0.4
3,467,356 + +0.4
3,467,525 - +0.4
3,467,610 + SMc03802 0.16 +0.3
3,467,611 - SMc03802 0.16 -1.5
3,467,611 - SMc03802 0.16 -0.0
3,467,629 + +0.2
3,467,748 - SMc03802 0.36 -1.1
3,467,797 + SMc03802 0.43 +0.7
3,467,797 + SMc03802 0.43 -1.0
3,467,797 + SMc03802 0.43 +0.4
3,468,022 - SMc03802 0.76 -0.4
3,468,172 - -1.1

Or see this region's nucleotide sequence