Strain Fitness in Sinorhizobium meliloti 1021 around SMc03764

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03763 and SMc03764 are separated by 133 nucleotidesSMc03764 and SMc03765 are separated by 537 nucleotides SMc03763: SMc03763 - cytosine-specific methyltransferase, at 3,427,974 to 3,429,296 SMc03763 SMc03764: SMc03764 - DNA mismatch endonuclease, patch repair protein, at 3,429,430 to 3,429,867 SMc03764 SMc03765: SMc03765 - hypothetical protein, at 3,430,405 to 3,431,994 SMc03765 Position (kb) 3429 3430Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3428.715 kb on - strand, within SMc03763at 3428.778 kb on + strand, within SMc03763at 3429.114 kb on + strand, within SMc03763at 3429.115 kb on - strand, within SMc03763at 3429.374 kb on - strandat 3429.612 kb on - strand, within SMc03764at 3429.612 kb on - strand, within SMc03764at 3429.679 kb on - strand, within SMc03764at 3429.679 kb on - strand, within SMc03764at 3429.679 kb on - strand, within SMc03764at 3429.828 kb on - strandat 3429.962 kb on + strandat 3429.973 kb on - strandat 3429.973 kb on - strandat 3429.973 kb on - strandat 3430.002 kb on - strandat 3430.042 kb on + strandat 3430.042 kb on + strandat 3430.079 kb on + strandat 3430.079 kb on + strandat 3430.079 kb on + strandat 3430.091 kb on + strandat 3430.109 kb on + strandat 3430.165 kb on + strandat 3430.166 kb on - strandat 3430.166 kb on - strandat 3430.201 kb on - strandat 3430.263 kb on + strandat 3430.263 kb on + strandat 3430.629 kb on - strand, within SMc03765at 3430.730 kb on - strand, within SMc03765at 3430.755 kb on + strand, within SMc03765at 3430.795 kb on + strand, within SMc03765at 3430.796 kb on - strand, within SMc03765

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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3,428,715 - SMc03763 0.56 -1.0
3,428,778 + SMc03763 0.61 -1.8
3,429,114 + SMc03763 0.86 -1.4
3,429,115 - SMc03763 0.86 -4.0
3,429,374 - +0.5
3,429,612 - SMc03764 0.42 +0.8
3,429,612 - SMc03764 0.42 +0.4
3,429,679 - SMc03764 0.57 -0.1
3,429,679 - SMc03764 0.57 -0.3
3,429,679 - SMc03764 0.57 +0.7
3,429,828 - -0.0
3,429,962 + -0.8
3,429,973 - +0.2
3,429,973 - +1.4
3,429,973 - -0.2
3,430,002 - -0.2
3,430,042 + -0.3
3,430,042 + +0.1
3,430,079 + -0.3
3,430,079 + +1.5
3,430,079 + -0.2
3,430,091 + -0.1
3,430,109 + -0.3
3,430,165 + +0.1
3,430,166 - +0.0
3,430,166 - -0.5
3,430,201 - -0.4
3,430,263 + +0.1
3,430,263 + +0.1
3,430,629 - SMc03765 0.14 +0.5
3,430,730 - SMc03765 0.20 +0.2
3,430,755 + SMc03765 0.22 +2.3
3,430,795 + SMc03765 0.25 +0.9
3,430,796 - SMc03765 0.25 +0.0

Or see this region's nucleotide sequence