Strain Fitness in Sinorhizobium meliloti 1021 around SMc03288

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03287 and SMc03288 are separated by 732 nucleotidesSMc03288 and SMc03289 are separated by 433 nucleotides SMc03287: SMc03287 - oxidoreductase, at 3,402,810 to 3,405,314 SMc03287 SMc03288: SMc03288 - hypothetical protein, at 3,406,047 to 3,406,367 SMc03288 SMc03289: SMc03289 - hypothetical protein, at 3,406,801 to 3,406,983 SMc03289 Position (kb) 3406 3407Strain fitness (log2 ratio) -2 -1 0 1 2at 3405.086 kb on - strandat 3405.143 kb on + strandat 3405.171 kb on + strandat 3405.171 kb on + strandat 3405.172 kb on - strandat 3405.200 kb on + strandat 3405.261 kb on + strandat 3405.395 kb on - strandat 3405.448 kb on - strandat 3405.458 kb on + strandat 3405.539 kb on + strandat 3405.539 kb on + strandat 3405.540 kb on - strandat 3405.543 kb on - strandat 3405.577 kb on + strandat 3405.584 kb on + strandat 3405.585 kb on - strandat 3405.588 kb on - strandat 3405.590 kb on - strandat 3405.590 kb on - strandat 3405.604 kb on - strandat 3405.691 kb on + strandat 3405.691 kb on + strandat 3405.704 kb on - strandat 3405.812 kb on - strandat 3405.874 kb on + strandat 3405.925 kb on + strandat 3405.925 kb on + strandat 3405.926 kb on - strandat 3405.963 kb on + strandat 3405.964 kb on - strandat 3405.995 kb on + strandat 3406.006 kb on + strandat 3406.185 kb on + strand, within SMc03288at 3406.186 kb on - strand, within SMc03288at 3406.293 kb on + strand, within SMc03288at 3406.334 kb on - strand, within SMc03288at 3406.460 kb on + strandat 3406.460 kb on + strandat 3406.461 kb on - strandat 3406.498 kb on + strandat 3406.524 kb on + strandat 3406.531 kb on + strandat 3406.531 kb on + strandat 3406.532 kb on - strandat 3406.572 kb on + strandat 3406.574 kb on + strandat 3406.577 kb on + strandat 3406.603 kb on + strandat 3406.745 kb on + strandat 3406.746 kb on - strandat 3406.746 kb on - strandat 3406.746 kb on - strandat 3406.746 kb on - strandat 3406.909 kb on + strand, within SMc03289at 3406.909 kb on + strand, within SMc03289at 3406.909 kb on + strand, within SMc03289at 3406.934 kb on + strand, within SMc03289at 3406.950 kb on + strand, within SMc03289at 3407.062 kb on + strandat 3407.099 kb on - strandat 3407.188 kb on - strandat 3407.193 kb on + strandat 3407.193 kb on + strandat 3407.193 kb on + strandat 3407.193 kb on + strandat 3407.193 kb on + strandat 3407.194 kb on - strandat 3407.194 kb on - strandat 3407.194 kb on - strandat 3407.194 kb on - strandat 3407.231 kb on + strandat 3407.241 kb on + strandat 3407.314 kb on - strandat 3407.314 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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3,405,086 - -0.2
3,405,143 + -0.3
3,405,171 + -0.3
3,405,171 + +0.1
3,405,172 - +1.0
3,405,200 + +0.5
3,405,261 + -0.0
3,405,395 - -2.2
3,405,448 - -0.3
3,405,458 + -0.0
3,405,539 + +0.1
3,405,539 + -0.6
3,405,540 - -0.2
3,405,543 - -0.0
3,405,577 + +0.4
3,405,584 + -0.3
3,405,585 - -0.1
3,405,588 - -0.5
3,405,590 - -0.3
3,405,590 - -0.5
3,405,604 - -0.1
3,405,691 + -0.8
3,405,691 + -0.2
3,405,704 - -0.1
3,405,812 - -0.5
3,405,874 + -0.1
3,405,925 + -0.5
3,405,925 + -1.7
3,405,926 - +1.1
3,405,963 + -0.1
3,405,964 - -0.1
3,405,995 + +0.5
3,406,006 + -0.3
3,406,185 + SMc03288 0.43 +0.3
3,406,186 - SMc03288 0.43 +0.5
3,406,293 + SMc03288 0.77 +0.3
3,406,334 - SMc03288 0.89 +0.2
3,406,460 + -0.1
3,406,460 + -0.1
3,406,461 - -1.6
3,406,498 + -0.2
3,406,524 + -0.6
3,406,531 + -0.1
3,406,531 + -0.4
3,406,532 - +2.0
3,406,572 + +0.3
3,406,574 + -0.3
3,406,577 + -0.3
3,406,603 + +0.0
3,406,745 + -0.3
3,406,746 - -1.1
3,406,746 - +0.3
3,406,746 - +0.1
3,406,746 - +0.6
3,406,909 + SMc03289 0.59 -0.2
3,406,909 + SMc03289 0.59 -0.7
3,406,909 + SMc03289 0.59 +0.0
3,406,934 + SMc03289 0.73 +0.7
3,406,950 + SMc03289 0.81 +0.5
3,407,062 + +0.4
3,407,099 - +0.8
3,407,188 - -0.2
3,407,193 + -2.0
3,407,193 + -0.1
3,407,193 + -0.2
3,407,193 + -0.7
3,407,193 + -0.0
3,407,194 - +0.3
3,407,194 - +0.8
3,407,194 - -0.5
3,407,194 - +0.1
3,407,231 + +0.8
3,407,241 + -0.0
3,407,314 - +0.5
3,407,314 - -0.3

Or see this region's nucleotide sequence