Strain Fitness in Sinorhizobium meliloti 1021 around SMc03228

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03226 and SMc03227 are separated by 14 nucleotidesSMc03227 and SMc03228 are separated by 6 nucleotidesSMc03228 and SMc03229 are separated by 17 nucleotides SMc03226: SMc03226 - hypothetical protein, at 3,335,825 to 3,336,481 SMc03226 SMc03227: SMc03227 - hypothetical protein, at 3,336,496 to 3,336,927 SMc03227 SMc03228: SMc03228 - YciI-like protein, at 3,336,934 to 3,337,227 SMc03228 SMc03229: SMc03229 - NAD(P)H-dependent glycerol-3-phosphate dehydrogenase, at 3,337,245 to 3,338,246 SMc03229 Position (kb) 3336 3337 3338Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3335.943 kb on + strand, within SMc03226at 3335.944 kb on - strand, within SMc03226at 3336.037 kb on - strand, within SMc03226at 3336.057 kb on + strand, within SMc03226at 3336.057 kb on + strand, within SMc03226at 3336.058 kb on - strand, within SMc03226at 3336.089 kb on - strand, within SMc03226at 3336.484 kb on + strandat 3336.484 kb on + strandat 3336.585 kb on + strand, within SMc03227at 3336.773 kb on + strand, within SMc03227at 3336.775 kb on + strand, within SMc03227at 3336.828 kb on - strand, within SMc03227at 3336.965 kb on + strand, within SMc03228at 3336.965 kb on + strand, within SMc03228at 3336.965 kb on + strand, within SMc03228at 3336.966 kb on - strand, within SMc03228at 3336.966 kb on - strand, within SMc03228at 3336.966 kb on - strand, within SMc03228at 3337.148 kb on + strand, within SMc03228at 3337.954 kb on + strand, within SMc03229at 3337.959 kb on - strand, within SMc03229at 3338.042 kb on - strand, within SMc03229

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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3,335,943 + SMc03226 0.18 +0.1
3,335,944 - SMc03226 0.18 -0.9
3,336,037 - SMc03226 0.32 -0.2
3,336,057 + SMc03226 0.35 +0.8
3,336,057 + SMc03226 0.35 -0.2
3,336,058 - SMc03226 0.35 -0.0
3,336,089 - SMc03226 0.40 +0.7
3,336,484 + -2.8
3,336,484 + +0.9
3,336,585 + SMc03227 0.21 -0.5
3,336,773 + SMc03227 0.64 +0.4
3,336,775 + SMc03227 0.65 -0.7
3,336,828 - SMc03227 0.77 -0.3
3,336,965 + SMc03228 0.11 +0.6
3,336,965 + SMc03228 0.11 -0.1
3,336,965 + SMc03228 0.11 +2.0
3,336,966 - SMc03228 0.11 -0.2
3,336,966 - SMc03228 0.11 +0.7
3,336,966 - SMc03228 0.11 +0.8
3,337,148 + SMc03228 0.73 +0.5
3,337,954 + SMc03229 0.71 -1.7
3,337,959 - SMc03229 0.71 -2.3
3,338,042 - SMc03229 0.80 -2.2

Or see this region's nucleotide sequence