Strain Fitness in Sinorhizobium meliloti 1021 around SMc03158

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03156 and SMc03157 are separated by 139 nucleotidesSMc03157 and SMc03158 are separated by 38 nucleotidesSMc03158 and SMc03159 overlap by 11 nucleotides SMc03156: SMc03156 - hypothetical protein, at 3,113,657 to 3,114,604 SMc03156 SMc03157: SMc03157 - outer membrane lipoprotein transmembrane, at 3,114,744 to 3,115,520 SMc03157 SMc03158: SMc03158 - ABC transporter permease, at 3,115,559 to 3,116,224 SMc03158 SMc03159: SMc03159 - ABC transporter ATP-binding protein, at 3,116,214 to 3,117,290 SMc03159 Position (kb) 3115 3116 3117Strain fitness (log2 ratio) -1 0 1 2at 3114.602 kb on + strandat 3114.603 kb on - strandat 3114.704 kb on - strandat 3114.715 kb on + strandat 3114.811 kb on + strandat 3115.190 kb on + strand, within SMc03157at 3115.190 kb on + strand, within SMc03157at 3115.191 kb on - strand, within SMc03157at 3115.191 kb on - strand, within SMc03157at 3115.205 kb on - strand, within SMc03157at 3115.348 kb on + strand, within SMc03157at 3115.348 kb on + strand, within SMc03157at 3115.349 kb on - strand, within SMc03157at 3115.349 kb on - strand, within SMc03157at 3115.369 kb on + strand, within SMc03157at 3115.371 kb on + strand, within SMc03157at 3115.371 kb on + strand, within SMc03157at 3115.371 kb on + strand, within SMc03157at 3115.372 kb on - strand, within SMc03157at 3115.372 kb on - strand, within SMc03157at 3115.372 kb on - strand, within SMc03157at 3115.626 kb on - strand, within SMc03158at 3115.690 kb on - strand, within SMc03158at 3116.172 kb on + strandat 3116.172 kb on + strandat 3116.172 kb on + strandat 3116.172 kb on + strandat 3116.173 kb on - strandat 3116.173 kb on - strandat 3116.173 kb on - strandat 3116.173 kb on - strandat 3116.224 kb on + strandat 3116.224 kb on + strandat 3116.225 kb on - strandat 3116.302 kb on + strandat 3116.302 kb on + strandat 3116.303 kb on - strandat 3116.627 kb on + strand, within SMc03159at 3116.628 kb on - strand, within SMc03159at 3117.203 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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3,114,602 + +0.8
3,114,603 - -0.3
3,114,704 - +0.4
3,114,715 + -0.6
3,114,811 + +0.6
3,115,190 + SMc03157 0.57 -1.1
3,115,190 + SMc03157 0.57 +0.2
3,115,191 - SMc03157 0.58 -0.1
3,115,191 - SMc03157 0.58 +0.2
3,115,205 - SMc03157 0.59 +1.8
3,115,348 + SMc03157 0.78 -0.3
3,115,348 + SMc03157 0.78 +0.8
3,115,349 - SMc03157 0.78 -0.1
3,115,349 - SMc03157 0.78 -1.2
3,115,369 + SMc03157 0.80 -0.3
3,115,371 + SMc03157 0.81 +0.1
3,115,371 + SMc03157 0.81 +1.0
3,115,371 + SMc03157 0.81 +0.2
3,115,372 - SMc03157 0.81 -0.1
3,115,372 - SMc03157 0.81 +0.2
3,115,372 - SMc03157 0.81 +1.0
3,115,626 - SMc03158 0.10 +1.4
3,115,690 - SMc03158 0.20 +0.3
3,116,172 + +0.4
3,116,172 + +0.2
3,116,172 + +0.3
3,116,172 + +0.4
3,116,173 - +1.3
3,116,173 - -0.0
3,116,173 - -0.3
3,116,173 - +0.2
3,116,224 + -0.2
3,116,224 + +1.0
3,116,225 - +0.0
3,116,302 + -0.8
3,116,302 + -0.7
3,116,303 - -0.7
3,116,627 + SMc03159 0.38 +0.3
3,116,628 - SMc03159 0.38 +0.6
3,117,203 + -0.1

Or see this region's nucleotide sequence