Strain Fitness in Sinorhizobium meliloti 1021 around SMc03102

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03103 and SMc03102 are separated by 15 nucleotidesSMc03102 and SMc03101 are separated by 101 nucleotides SMc03103: SMc03103 - carbon monoxide dehydrogenase medium subunit transmembrane protein, at 3,238,853 to 3,239,650 SMc03103 SMc03102: SMc03102 - carbon monoxide dehydrogenase large subunit transmembrane protein, at 3,239,666 to 3,242,011 SMc03102 SMc03101: SMc03101 - carbon monoxide dehydrogenase small subunit protein, at 3,242,113 to 3,242,601 SMc03101 Position (kb) 3239 3240 3241 3242 3243Strain fitness (log2 ratio) -2 -1 0 1 2at 3238.697 kb on + strandat 3238.698 kb on - strandat 3238.925 kb on - strandat 3239.103 kb on + strand, within SMc03103at 3239.134 kb on - strand, within SMc03103at 3239.330 kb on - strand, within SMc03103at 3239.357 kb on + strand, within SMc03103at 3239.357 kb on + strand, within SMc03103at 3239.358 kb on - strand, within SMc03103at 3239.358 kb on - strand, within SMc03103at 3239.572 kb on - strandat 3239.572 kb on - strandat 3239.635 kb on - strandat 3239.646 kb on + strandat 3239.646 kb on + strandat 3239.647 kb on - strandat 3239.647 kb on - strandat 3239.647 kb on - strandat 3239.647 kb on - strandat 3239.647 kb on - strandat 3239.647 kb on - strandat 3239.677 kb on + strandat 3239.678 kb on - strandat 3239.678 kb on - strandat 3239.833 kb on + strandat 3239.886 kb on + strandat 3239.887 kb on - strandat 3239.895 kb on + strandat 3239.895 kb on + strandat 3239.896 kb on - strandat 3239.896 kb on - strandat 3239.928 kb on + strand, within SMc03102at 3239.928 kb on + strand, within SMc03102at 3239.929 kb on - strand, within SMc03102at 3240.013 kb on + strand, within SMc03102at 3240.014 kb on - strand, within SMc03102at 3240.093 kb on + strand, within SMc03102at 3240.093 kb on + strand, within SMc03102at 3240.129 kb on + strand, within SMc03102at 3240.129 kb on + strand, within SMc03102at 3240.129 kb on + strand, within SMc03102at 3240.176 kb on - strand, within SMc03102at 3240.187 kb on - strand, within SMc03102at 3240.378 kb on + strand, within SMc03102at 3240.378 kb on + strand, within SMc03102at 3240.379 kb on - strand, within SMc03102at 3240.379 kb on - strand, within SMc03102at 3240.379 kb on - strand, within SMc03102at 3240.379 kb on - strand, within SMc03102at 3240.628 kb on + strand, within SMc03102at 3240.629 kb on - strand, within SMc03102at 3240.629 kb on - strand, within SMc03102at 3240.630 kb on + strand, within SMc03102at 3240.630 kb on + strand, within SMc03102at 3240.631 kb on - strand, within SMc03102at 3240.756 kb on + strand, within SMc03102at 3240.873 kb on + strand, within SMc03102at 3240.873 kb on + strand, within SMc03102at 3240.874 kb on - strand, within SMc03102at 3240.922 kb on + strand, within SMc03102at 3240.928 kb on + strand, within SMc03102at 3240.929 kb on - strand, within SMc03102at 3240.929 kb on - strand, within SMc03102at 3240.929 kb on - strand, within SMc03102at 3240.931 kb on - strand, within SMc03102at 3240.969 kb on + strand, within SMc03102at 3240.969 kb on + strand, within SMc03102at 3240.993 kb on + strand, within SMc03102at 3240.994 kb on - strand, within SMc03102at 3240.999 kb on + strand, within SMc03102at 3240.999 kb on + strand, within SMc03102at 3240.999 kb on + strand, within SMc03102at 3240.999 kb on + strand, within SMc03102at 3241.000 kb on - strand, within SMc03102at 3241.030 kb on + strand, within SMc03102at 3241.030 kb on + strand, within SMc03102at 3241.030 kb on + strand, within SMc03102at 3241.030 kb on + strand, within SMc03102at 3241.030 kb on + strand, within SMc03102at 3241.030 kb on + strand, within SMc03102at 3241.030 kb on + strand, within SMc03102at 3241.030 kb on + strand, within SMc03102at 3241.031 kb on - strand, within SMc03102at 3241.031 kb on - strand, within SMc03102at 3241.031 kb on - strand, within SMc03102at 3241.031 kb on - strand, within SMc03102at 3241.032 kb on + strand, within SMc03102at 3241.032 kb on + strand, within SMc03102at 3241.032 kb on + strand, within SMc03102at 3241.032 kb on + strand, within SMc03102at 3241.032 kb on + strand, within SMc03102at 3241.032 kb on + strand, within SMc03102at 3241.033 kb on - strand, within SMc03102at 3241.033 kb on - strand, within SMc03102at 3241.033 kb on - strand, within SMc03102at 3241.033 kb on - strand, within SMc03102at 3241.033 kb on - strand, within SMc03102at 3241.049 kb on + strand, within SMc03102at 3241.050 kb on - strand, within SMc03102at 3241.050 kb on - strand, within SMc03102at 3241.051 kb on + strand, within SMc03102at 3241.193 kb on - strand, within SMc03102at 3241.193 kb on - strand, within SMc03102at 3241.224 kb on + strand, within SMc03102at 3241.225 kb on - strand, within SMc03102at 3241.302 kb on + strand, within SMc03102at 3241.302 kb on + strand, within SMc03102at 3241.302 kb on + strand, within SMc03102at 3241.303 kb on - strand, within SMc03102at 3241.303 kb on - strand, within SMc03102at 3241.303 kb on - strand, within SMc03102at 3241.303 kb on - strand, within SMc03102at 3241.303 kb on - strand, within SMc03102at 3241.353 kb on + strand, within SMc03102at 3241.353 kb on + strand, within SMc03102at 3241.353 kb on + strand, within SMc03102at 3241.353 kb on + strand, within SMc03102at 3241.353 kb on + strand, within SMc03102at 3241.383 kb on + strand, within SMc03102at 3241.384 kb on - strand, within SMc03102at 3241.606 kb on - strand, within SMc03102at 3241.687 kb on - strand, within SMc03102at 3241.814 kb on + strandat 3241.937 kb on - strandat 3241.938 kb on + strandat 3241.938 kb on + strandat 3242.016 kb on + strandat 3242.321 kb on + strand, within SMc03101at 3242.556 kb on + strandat 3242.691 kb on - strandat 3242.814 kb on - strandat 3242.864 kb on + strandat 3242.864 kb on + strandat 3242.865 kb on - strandat 3242.873 kb on + strandat 3242.973 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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3,238,697 + -0.4
3,238,698 - -0.2
3,238,925 - +0.4
3,239,103 + SMc03103 0.31 -0.4
3,239,134 - SMc03103 0.35 +0.5
3,239,330 - SMc03103 0.60 -0.0
3,239,357 + SMc03103 0.63 +0.3
3,239,357 + SMc03103 0.63 -0.2
3,239,358 - SMc03103 0.63 +0.9
3,239,358 - SMc03103 0.63 +0.5
3,239,572 - +0.1
3,239,572 - -0.6
3,239,635 - -0.4
3,239,646 + -0.6
3,239,646 + -0.4
3,239,647 - +0.2
3,239,647 - +0.6
3,239,647 - +2.0
3,239,647 - -0.1
3,239,647 - -0.0
3,239,647 - -0.3
3,239,677 + +0.3
3,239,678 - -0.1
3,239,678 - +0.4
3,239,833 + -0.2
3,239,886 + +0.1
3,239,887 - +0.5
3,239,895 + +0.1
3,239,895 + +0.2
3,239,896 - -0.1
3,239,896 - -0.7
3,239,928 + SMc03102 0.11 +0.0
3,239,928 + SMc03102 0.11 +0.1
3,239,929 - SMc03102 0.11 -0.4
3,240,013 + SMc03102 0.15 -0.1
3,240,014 - SMc03102 0.15 -0.0
3,240,093 + SMc03102 0.18 +0.5
3,240,093 + SMc03102 0.18 +0.8
3,240,129 + SMc03102 0.20 +0.4
3,240,129 + SMc03102 0.20 -1.5
3,240,129 + SMc03102 0.20 +0.4
3,240,176 - SMc03102 0.22 -0.8
3,240,187 - SMc03102 0.22 +0.8
3,240,378 + SMc03102 0.30 +0.0
3,240,378 + SMc03102 0.30 -0.2
3,240,379 - SMc03102 0.30 +0.2
3,240,379 - SMc03102 0.30 +0.6
3,240,379 - SMc03102 0.30 -0.6
3,240,379 - SMc03102 0.30 +0.2
3,240,628 + SMc03102 0.41 -0.5
3,240,629 - SMc03102 0.41 -0.0
3,240,629 - SMc03102 0.41 +0.0
3,240,630 + SMc03102 0.41 -0.6
3,240,630 + SMc03102 0.41 -0.6
3,240,631 - SMc03102 0.41 -0.6
3,240,756 + SMc03102 0.46 -0.3
3,240,873 + SMc03102 0.51 +0.3
3,240,873 + SMc03102 0.51 -0.0
3,240,874 - SMc03102 0.51 -1.3
3,240,922 + SMc03102 0.54 +0.2
3,240,928 + SMc03102 0.54 -0.3
3,240,929 - SMc03102 0.54 -0.9
3,240,929 - SMc03102 0.54 -1.0
3,240,929 - SMc03102 0.54 +1.5
3,240,931 - SMc03102 0.54 +0.0
3,240,969 + SMc03102 0.56 -0.1
3,240,969 + SMc03102 0.56 -0.4
3,240,993 + SMc03102 0.57 -0.4
3,240,994 - SMc03102 0.57 -0.9
3,240,999 + SMc03102 0.57 +1.6
3,240,999 + SMc03102 0.57 -0.1
3,240,999 + SMc03102 0.57 +0.5
3,240,999 + SMc03102 0.57 +0.4
3,241,000 - SMc03102 0.57 -0.1
3,241,030 + SMc03102 0.58 -0.2
3,241,030 + SMc03102 0.58 -0.1
3,241,030 + SMc03102 0.58 -0.7
3,241,030 + SMc03102 0.58 +0.5
3,241,030 + SMc03102 0.58 -0.4
3,241,030 + SMc03102 0.58 +0.6
3,241,030 + SMc03102 0.58 -0.6
3,241,030 + SMc03102 0.58 +0.9
3,241,031 - SMc03102 0.58 +0.1
3,241,031 - SMc03102 0.58 +1.0
3,241,031 - SMc03102 0.58 -0.4
3,241,031 - SMc03102 0.58 +0.0
3,241,032 + SMc03102 0.58 -0.2
3,241,032 + SMc03102 0.58 -0.2
3,241,032 + SMc03102 0.58 -0.4
3,241,032 + SMc03102 0.58 +0.2
3,241,032 + SMc03102 0.58 -0.0
3,241,032 + SMc03102 0.58 -1.4
3,241,033 - SMc03102 0.58 -0.5
3,241,033 - SMc03102 0.58 +0.1
3,241,033 - SMc03102 0.58 +1.2
3,241,033 - SMc03102 0.58 -0.7
3,241,033 - SMc03102 0.58 -0.0
3,241,049 + SMc03102 0.59 +0.5
3,241,050 - SMc03102 0.59 -0.2
3,241,050 - SMc03102 0.59 -0.6
3,241,051 + SMc03102 0.59 -1.3
3,241,193 - SMc03102 0.65 +0.4
3,241,193 - SMc03102 0.65 +0.2
3,241,224 + SMc03102 0.66 -0.7
3,241,225 - SMc03102 0.66 +1.5
3,241,302 + SMc03102 0.70 +0.5
3,241,302 + SMc03102 0.70 +0.1
3,241,302 + SMc03102 0.70 -1.4
3,241,303 - SMc03102 0.70 -0.6
3,241,303 - SMc03102 0.70 +0.1
3,241,303 - SMc03102 0.70 -1.6
3,241,303 - SMc03102 0.70 +0.3
3,241,303 - SMc03102 0.70 +0.6
3,241,353 + SMc03102 0.72 -2.2
3,241,353 + SMc03102 0.72 +0.1
3,241,353 + SMc03102 0.72 +0.3
3,241,353 + SMc03102 0.72 -0.1
3,241,353 + SMc03102 0.72 -0.5
3,241,383 + SMc03102 0.73 -1.1
3,241,384 - SMc03102 0.73 -1.2
3,241,606 - SMc03102 0.83 -0.1
3,241,687 - SMc03102 0.86 -0.5
3,241,814 + -0.8
3,241,937 - +0.2
3,241,938 + +0.4
3,241,938 + +0.4
3,242,016 + -0.7
3,242,321 + SMc03101 0.43 -0.8
3,242,556 + +0.0
3,242,691 - -0.6
3,242,814 - +2.0
3,242,864 + +0.2
3,242,864 + -0.8
3,242,865 - -0.1
3,242,873 + +1.0
3,242,973 - -1.6

Or see this region's nucleotide sequence