Strain Fitness in Sinorhizobium meliloti 1021 around SMc03095

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03096 and SMc03095 are separated by 142 nucleotidesSMc03095 and SMc03094 are separated by 123 nucleotidesSMc03094 and SMc03093 are separated by 41 nucleotides SMc03096: SMc03096 - signal peptide protein, at 3,248,712 to 3,254,321 SMc03096 SMc03095: SMc03095 - hypothetical protein, at 3,254,464 to 3,254,832 SMc03095 SMc03094: SMc03094 - aminoglycoside 3'-phosphotransferase, at 3,254,956 to 3,255,741 SMc03094 SMc03093: SMc03093 - hypothetical protein, at 3,255,783 to 3,256,262 SMc03093 Position (kb) 3254 3255Strain fitness (log2 ratio) -2 -1 0 1at 3254.316 kb on + strandat 3254.316 kb on + strandat 3254.316 kb on + strandat 3254.317 kb on - strandat 3254.384 kb on + strandat 3254.414 kb on - strandat 3254.478 kb on - strandat 3254.478 kb on - strandat 3254.635 kb on + strand, within SMc03095at 3254.672 kb on + strand, within SMc03095at 3254.672 kb on + strand, within SMc03095at 3254.672 kb on + strand, within SMc03095at 3254.830 kb on + strandat 3254.830 kb on + strandat 3254.830 kb on + strandat 3254.830 kb on + strandat 3254.830 kb on + strandat 3254.841 kb on + strandat 3254.878 kb on + strandat 3254.878 kb on + strandat 3254.935 kb on + strandat 3254.936 kb on - strandat 3254.944 kb on + strandat 3254.944 kb on + strandat 3254.944 kb on + strandat 3254.945 kb on - strandat 3254.945 kb on - strandat 3255.088 kb on - strand, within SMc03094at 3255.168 kb on + strand, within SMc03094at 3255.168 kb on + strand, within SMc03094at 3255.169 kb on - strand, within SMc03094at 3255.169 kb on - strand, within SMc03094at 3255.501 kb on - strand, within SMc03094at 3255.501 kb on - strand, within SMc03094at 3255.598 kb on + strand, within SMc03094at 3255.599 kb on - strand, within SMc03094at 3255.599 kb on - strand, within SMc03094

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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3,254,316 + -1.9
3,254,316 + +0.9
3,254,316 + +1.0
3,254,317 - -0.1
3,254,384 + -0.2
3,254,414 - -1.4
3,254,478 - +0.9
3,254,478 - +0.1
3,254,635 + SMc03095 0.46 +0.0
3,254,672 + SMc03095 0.56 +1.3
3,254,672 + SMc03095 0.56 +0.1
3,254,672 + SMc03095 0.56 +0.5
3,254,830 + +0.4
3,254,830 + -1.5
3,254,830 + +0.5
3,254,830 + +0.4
3,254,830 + -1.2
3,254,841 + -0.1
3,254,878 + -0.5
3,254,878 + -0.3
3,254,935 + +1.2
3,254,936 - +0.1
3,254,944 + +0.0
3,254,944 + +0.9
3,254,944 + +0.5
3,254,945 - -0.0
3,254,945 - -0.1
3,255,088 - SMc03094 0.17 -0.5
3,255,168 + SMc03094 0.27 +0.1
3,255,168 + SMc03094 0.27 -0.2
3,255,169 - SMc03094 0.27 -0.1
3,255,169 - SMc03094 0.27 -0.2
3,255,501 - SMc03094 0.69 +0.2
3,255,501 - SMc03094 0.69 +0.4
3,255,598 + SMc03094 0.82 +0.2
3,255,599 - SMc03094 0.82 +0.0
3,255,599 - SMc03094 0.82 -0.1

Or see this region's nucleotide sequence