Strain Fitness in Sinorhizobium meliloti 1021 around SMc02726

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02725 and SMc02726 are separated by 273 nucleotidesSMc02726 and SMc02727 are separated by 123 nucleotides SMc02725: SMc02725 - anthranilate synthase, at 2,573,597 to 2,575,786 SMc02725 SMc02726: SMc02726 - iron transport protein, at 2,576,060 to 2,578,291 SMc02726 SMc02727: SMc02727 - hypothetical protein, at 2,578,415 to 2,579,401 SMc02727 Position (kb) 2576 2577 2578 2579Strain fitness (log2 ratio) -8 -7 -6 -5 -4 -3 -2 -1 0 1 2 3at 2575.158 kb on + strand, within SMc02725at 2575.186 kb on - strand, within SMc02725at 2575.309 kb on - strand, within SMc02725at 2575.309 kb on - strand, within SMc02725at 2575.531 kb on + strand, within SMc02725at 2575.532 kb on - strand, within SMc02725at 2575.534 kb on - strand, within SMc02725at 2575.610 kb on - strandat 2575.630 kb on - strandat 2575.698 kb on + strandat 2575.699 kb on - strandat 2575.699 kb on - strandat 2575.748 kb on - strandat 2575.749 kb on + strandat 2575.749 kb on + strandat 2575.775 kb on + strandat 2575.959 kb on - strandat 2576.156 kb on + strandat 2576.157 kb on - strandat 2576.194 kb on + strandat 2576.194 kb on + strandat 2576.194 kb on + strandat 2576.195 kb on - strandat 2576.195 kb on - strandat 2576.195 kb on - strandat 2576.195 kb on - strandat 2576.196 kb on + strandat 2576.196 kb on + strandat 2576.196 kb on + strandat 2576.196 kb on + strandat 2576.197 kb on - strandat 2576.210 kb on + strandat 2576.255 kb on - strandat 2576.362 kb on - strand, within SMc02726at 2576.440 kb on - strand, within SMc02726at 2576.532 kb on + strand, within SMc02726at 2576.595 kb on + strand, within SMc02726at 2576.599 kb on + strand, within SMc02726at 2576.599 kb on + strand, within SMc02726at 2576.599 kb on + strand, within SMc02726at 2576.600 kb on - strand, within SMc02726at 2576.727 kb on + strand, within SMc02726at 2576.728 kb on - strand, within SMc02726at 2576.737 kb on + strand, within SMc02726at 2576.737 kb on + strand, within SMc02726at 2576.739 kb on + strand, within SMc02726at 2576.739 kb on + strand, within SMc02726at 2576.740 kb on - strand, within SMc02726at 2576.740 kb on - strand, within SMc02726at 2576.807 kb on - strand, within SMc02726at 2576.814 kb on + strand, within SMc02726at 2576.815 kb on - strand, within SMc02726at 2576.815 kb on - strand, within SMc02726at 2576.887 kb on + strand, within SMc02726at 2576.997 kb on - strand, within SMc02726at 2577.088 kb on + strand, within SMc02726at 2577.089 kb on - strand, within SMc02726at 2577.089 kb on - strand, within SMc02726at 2577.090 kb on + strand, within SMc02726at 2577.090 kb on + strand, within SMc02726at 2577.091 kb on - strand, within SMc02726at 2577.282 kb on + strand, within SMc02726at 2577.340 kb on - strand, within SMc02726at 2577.383 kb on - strand, within SMc02726at 2577.384 kb on + strand, within SMc02726at 2577.384 kb on + strand, within SMc02726at 2577.385 kb on - strand, within SMc02726at 2577.385 kb on - strand, within SMc02726at 2577.690 kb on + strand, within SMc02726at 2577.690 kb on + strand, within SMc02726at 2577.690 kb on + strand, within SMc02726at 2577.690 kb on + strand, within SMc02726at 2577.691 kb on - strand, within SMc02726at 2577.691 kb on - strand, within SMc02726at 2577.691 kb on - strand, within SMc02726at 2577.818 kb on + strand, within SMc02726at 2577.819 kb on - strand, within SMc02726at 2577.819 kb on - strand, within SMc02726at 2577.913 kb on + strand, within SMc02726at 2577.915 kb on + strand, within SMc02726at 2577.916 kb on - strand, within SMc02726at 2577.916 kb on - strand, within SMc02726at 2577.916 kb on - strand, within SMc02726at 2577.949 kb on + strand, within SMc02726at 2578.004 kb on + strand, within SMc02726at 2578.004 kb on + strand, within SMc02726at 2578.004 kb on + strand, within SMc02726at 2578.005 kb on - strandat 2578.005 kb on - strand, within SMc02726at 2578.241 kb on + strandat 2578.383 kb on - strandat 2578.383 kb on - strandat 2578.779 kb on + strand, within SMc02727at 2578.779 kb on + strand, within SMc02727at 2578.853 kb on + strand, within SMc02727at 2578.854 kb on - strand, within SMc02727at 2579.117 kb on + strand, within SMc02727at 2579.117 kb on + strand, within SMc02727at 2579.118 kb on - strand, within SMc02727at 2579.118 kb on - strand, within SMc02727

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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2,575,158 + SMc02725 0.71 -1.7
2,575,186 - SMc02725 0.73 -1.1
2,575,309 - SMc02725 0.78 -5.5
2,575,309 - SMc02725 0.78 -4.0
2,575,531 + SMc02725 0.88 -4.5
2,575,532 - SMc02725 0.88 -6.2
2,575,534 - SMc02725 0.88 -4.5
2,575,610 - -3.5
2,575,630 - -0.7
2,575,698 + -3.1
2,575,699 - -8.1
2,575,699 - -0.5
2,575,748 - -4.3
2,575,749 + -4.7
2,575,749 + -4.4
2,575,775 + -6.0
2,575,959 - -0.8
2,576,156 + -0.8
2,576,157 - -0.8
2,576,194 + +0.4
2,576,194 + +1.1
2,576,194 + -0.1
2,576,195 - -0.4
2,576,195 - -0.3
2,576,195 - +0.9
2,576,195 - -2.1
2,576,196 + +1.7
2,576,196 + -0.4
2,576,196 + +0.3
2,576,196 + -0.3
2,576,197 - +0.7
2,576,210 + +0.3
2,576,255 - -0.7
2,576,362 - SMc02726 0.14 +0.2
2,576,440 - SMc02726 0.17 -0.0
2,576,532 + SMc02726 0.21 -0.1
2,576,595 + SMc02726 0.24 +0.4
2,576,599 + SMc02726 0.24 +1.1
2,576,599 + SMc02726 0.24 -0.6
2,576,599 + SMc02726 0.24 -0.6
2,576,600 - SMc02726 0.24 +0.1
2,576,727 + SMc02726 0.30 +0.1
2,576,728 - SMc02726 0.30 -0.5
2,576,737 + SMc02726 0.30 -0.2
2,576,737 + SMc02726 0.30 -0.8
2,576,739 + SMc02726 0.30 +0.4
2,576,739 + SMc02726 0.30 +0.2
2,576,740 - SMc02726 0.30 -0.3
2,576,740 - SMc02726 0.30 -0.3
2,576,807 - SMc02726 0.33 -0.8
2,576,814 + SMc02726 0.34 +0.8
2,576,815 - SMc02726 0.34 -0.2
2,576,815 - SMc02726 0.34 +0.4
2,576,887 + SMc02726 0.37 +0.2
2,576,997 - SMc02726 0.42 +0.4
2,577,088 + SMc02726 0.46 +0.7
2,577,089 - SMc02726 0.46 -0.6
2,577,089 - SMc02726 0.46 -0.1
2,577,090 + SMc02726 0.46 +0.3
2,577,090 + SMc02726 0.46 -0.5
2,577,091 - SMc02726 0.46 +0.8
2,577,282 + SMc02726 0.55 +0.7
2,577,340 - SMc02726 0.57 -0.1
2,577,383 - SMc02726 0.59 -0.0
2,577,384 + SMc02726 0.59 -0.9
2,577,384 + SMc02726 0.59 -0.5
2,577,385 - SMc02726 0.59 -0.2
2,577,385 - SMc02726 0.59 +0.5
2,577,690 + SMc02726 0.73 +0.8
2,577,690 + SMc02726 0.73 -0.3
2,577,690 + SMc02726 0.73 -0.5
2,577,690 + SMc02726 0.73 -0.8
2,577,691 - SMc02726 0.73 +0.4
2,577,691 - SMc02726 0.73 +0.4
2,577,691 - SMc02726 0.73 +0.3
2,577,818 + SMc02726 0.79 -0.2
2,577,819 - SMc02726 0.79 +3.3
2,577,819 - SMc02726 0.79 -0.0
2,577,913 + SMc02726 0.83 -0.6
2,577,915 + SMc02726 0.83 -0.4
2,577,916 - SMc02726 0.83 +0.3
2,577,916 - SMc02726 0.83 -0.8
2,577,916 - SMc02726 0.83 +0.8
2,577,949 + SMc02726 0.85 -1.1
2,578,004 + SMc02726 0.87 -0.1
2,578,004 + SMc02726 0.87 +0.7
2,578,004 + SMc02726 0.87 -0.0
2,578,005 - +2.3
2,578,005 - SMc02726 0.87 +0.6
2,578,241 + +0.3
2,578,383 - +0.3
2,578,383 - +0.9
2,578,779 + SMc02727 0.37 -0.2
2,578,779 + SMc02727 0.37 +0.9
2,578,853 + SMc02727 0.44 +0.0
2,578,854 - SMc02727 0.44 -0.9
2,579,117 + SMc02727 0.71 -0.5
2,579,117 + SMc02727 0.71 -1.1
2,579,118 - SMc02727 0.71 +0.9
2,579,118 - SMc02727 0.71 +0.2

Or see this region's nucleotide sequence