Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02725 and SMc02726 are separated by 273 nucleotides SMc02726 and SMc02727 are separated by 123 nucleotides
SMc02725: SMc02725 - anthranilate synthase, at 2,573,597 to 2,575,786
SMc02725
SMc02726: SMc02726 - iron transport protein, at 2,576,060 to 2,578,291
SMc02726
SMc02727: SMc02727 - hypothetical protein, at 2,578,415 to 2,579,401
SMc02727
Position (kb)
2576
2577
2578
2579 Strain fitness (log2 ratio)
-8
-7
-6
-5
-4
-3
-2
-1
0
1
2
3 at 2575.158 kb on + strand, within SMc02725 at 2575.186 kb on - strand, within SMc02725 at 2575.309 kb on - strand, within SMc02725 at 2575.309 kb on - strand, within SMc02725 at 2575.531 kb on + strand, within SMc02725 at 2575.532 kb on - strand, within SMc02725 at 2575.534 kb on - strand, within SMc02725 at 2575.610 kb on - strand at 2575.630 kb on - strand at 2575.698 kb on + strand at 2575.699 kb on - strand at 2575.699 kb on - strand at 2575.748 kb on - strand at 2575.749 kb on + strand at 2575.749 kb on + strand at 2575.775 kb on + strand at 2575.959 kb on - strand at 2576.156 kb on + strand at 2576.157 kb on - strand at 2576.194 kb on + strand at 2576.194 kb on + strand at 2576.194 kb on + strand at 2576.195 kb on - strand at 2576.195 kb on - strand at 2576.195 kb on - strand at 2576.195 kb on - strand at 2576.196 kb on + strand at 2576.196 kb on + strand at 2576.196 kb on + strand at 2576.196 kb on + strand at 2576.197 kb on - strand at 2576.210 kb on + strand at 2576.255 kb on - strand at 2576.362 kb on - strand, within SMc02726 at 2576.440 kb on - strand, within SMc02726 at 2576.532 kb on + strand, within SMc02726 at 2576.595 kb on + strand, within SMc02726 at 2576.599 kb on + strand, within SMc02726 at 2576.599 kb on + strand, within SMc02726 at 2576.599 kb on + strand, within SMc02726 at 2576.600 kb on - strand, within SMc02726 at 2576.727 kb on + strand, within SMc02726 at 2576.728 kb on - strand, within SMc02726 at 2576.737 kb on + strand, within SMc02726 at 2576.737 kb on + strand, within SMc02726 at 2576.739 kb on + strand, within SMc02726 at 2576.739 kb on + strand, within SMc02726 at 2576.740 kb on - strand, within SMc02726 at 2576.740 kb on - strand, within SMc02726 at 2576.807 kb on - strand, within SMc02726 at 2576.814 kb on + strand, within SMc02726 at 2576.815 kb on - strand, within SMc02726 at 2576.815 kb on - strand, within SMc02726 at 2576.887 kb on + strand, within SMc02726 at 2576.997 kb on - strand, within SMc02726 at 2577.088 kb on + strand, within SMc02726 at 2577.089 kb on - strand, within SMc02726 at 2577.089 kb on - strand, within SMc02726 at 2577.090 kb on + strand, within SMc02726 at 2577.090 kb on + strand, within SMc02726 at 2577.091 kb on - strand, within SMc02726 at 2577.282 kb on + strand, within SMc02726 at 2577.340 kb on - strand, within SMc02726 at 2577.383 kb on - strand, within SMc02726 at 2577.384 kb on + strand, within SMc02726 at 2577.384 kb on + strand, within SMc02726 at 2577.385 kb on - strand, within SMc02726 at 2577.385 kb on - strand, within SMc02726 at 2577.690 kb on + strand, within SMc02726 at 2577.690 kb on + strand, within SMc02726 at 2577.690 kb on + strand, within SMc02726 at 2577.690 kb on + strand, within SMc02726 at 2577.691 kb on - strand, within SMc02726 at 2577.691 kb on - strand, within SMc02726 at 2577.691 kb on - strand, within SMc02726 at 2577.818 kb on + strand, within SMc02726 at 2577.819 kb on - strand, within SMc02726 at 2577.819 kb on - strand, within SMc02726 at 2577.913 kb on + strand, within SMc02726 at 2577.915 kb on + strand, within SMc02726 at 2577.916 kb on - strand, within SMc02726 at 2577.916 kb on - strand, within SMc02726 at 2577.916 kb on - strand, within SMc02726 at 2577.949 kb on + strand, within SMc02726 at 2578.004 kb on + strand, within SMc02726 at 2578.004 kb on + strand, within SMc02726 at 2578.004 kb on + strand, within SMc02726 at 2578.005 kb on - strand at 2578.005 kb on - strand, within SMc02726 at 2578.241 kb on + strand at 2578.383 kb on - strand at 2578.383 kb on - strand at 2578.779 kb on + strand, within SMc02727 at 2578.779 kb on + strand, within SMc02727 at 2578.853 kb on + strand, within SMc02727 at 2578.854 kb on - strand, within SMc02727 at 2579.117 kb on + strand, within SMc02727 at 2579.117 kb on + strand, within SMc02727 at 2579.118 kb on - strand, within SMc02727 at 2579.118 kb on - strand, within SMc02727
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 2,575,158 + SMc02725 0.71 -1.7 2,575,186 - SMc02725 0.73 -1.1 2,575,309 - SMc02725 0.78 -5.5 2,575,309 - SMc02725 0.78 -4.0 2,575,531 + SMc02725 0.88 -4.5 2,575,532 - SMc02725 0.88 -6.2 2,575,534 - SMc02725 0.88 -4.5 2,575,610 - -3.5 2,575,630 - -0.7 2,575,698 + -3.1 2,575,699 - -8.1 2,575,699 - -0.5 2,575,748 - -4.3 2,575,749 + -4.7 2,575,749 + -4.4 2,575,775 + -6.0 2,575,959 - -0.8 2,576,156 + -0.8 2,576,157 - -0.8 2,576,194 + +0.4 2,576,194 + +1.1 2,576,194 + -0.1 2,576,195 - -0.4 2,576,195 - -0.3 2,576,195 - +0.9 2,576,195 - -2.1 2,576,196 + +1.7 2,576,196 + -0.4 2,576,196 + +0.3 2,576,196 + -0.3 2,576,197 - +0.7 2,576,210 + +0.3 2,576,255 - -0.7 2,576,362 - SMc02726 0.14 +0.2 2,576,440 - SMc02726 0.17 -0.0 2,576,532 + SMc02726 0.21 -0.1 2,576,595 + SMc02726 0.24 +0.4 2,576,599 + SMc02726 0.24 +1.1 2,576,599 + SMc02726 0.24 -0.6 2,576,599 + SMc02726 0.24 -0.6 2,576,600 - SMc02726 0.24 +0.1 2,576,727 + SMc02726 0.30 +0.1 2,576,728 - SMc02726 0.30 -0.5 2,576,737 + SMc02726 0.30 -0.2 2,576,737 + SMc02726 0.30 -0.8 2,576,739 + SMc02726 0.30 +0.4 2,576,739 + SMc02726 0.30 +0.2 2,576,740 - SMc02726 0.30 -0.3 2,576,740 - SMc02726 0.30 -0.3 2,576,807 - SMc02726 0.33 -0.8 2,576,814 + SMc02726 0.34 +0.8 2,576,815 - SMc02726 0.34 -0.2 2,576,815 - SMc02726 0.34 +0.4 2,576,887 + SMc02726 0.37 +0.2 2,576,997 - SMc02726 0.42 +0.4 2,577,088 + SMc02726 0.46 +0.7 2,577,089 - SMc02726 0.46 -0.6 2,577,089 - SMc02726 0.46 -0.1 2,577,090 + SMc02726 0.46 +0.3 2,577,090 + SMc02726 0.46 -0.5 2,577,091 - SMc02726 0.46 +0.8 2,577,282 + SMc02726 0.55 +0.7 2,577,340 - SMc02726 0.57 -0.1 2,577,383 - SMc02726 0.59 -0.0 2,577,384 + SMc02726 0.59 -0.9 2,577,384 + SMc02726 0.59 -0.5 2,577,385 - SMc02726 0.59 -0.2 2,577,385 - SMc02726 0.59 +0.5 2,577,690 + SMc02726 0.73 +0.8 2,577,690 + SMc02726 0.73 -0.3 2,577,690 + SMc02726 0.73 -0.5 2,577,690 + SMc02726 0.73 -0.8 2,577,691 - SMc02726 0.73 +0.4 2,577,691 - SMc02726 0.73 +0.4 2,577,691 - SMc02726 0.73 +0.3 2,577,818 + SMc02726 0.79 -0.2 2,577,819 - SMc02726 0.79 +3.3 2,577,819 - SMc02726 0.79 -0.0 2,577,913 + SMc02726 0.83 -0.6 2,577,915 + SMc02726 0.83 -0.4 2,577,916 - SMc02726 0.83 +0.3 2,577,916 - SMc02726 0.83 -0.8 2,577,916 - SMc02726 0.83 +0.8 2,577,949 + SMc02726 0.85 -1.1 2,578,004 + SMc02726 0.87 -0.1 2,578,004 + SMc02726 0.87 +0.7 2,578,004 + SMc02726 0.87 -0.0 2,578,005 - +2.3 2,578,005 - SMc02726 0.87 +0.6 2,578,241 + +0.3 2,578,383 - +0.3 2,578,383 - +0.9 2,578,779 + SMc02727 0.37 -0.2 2,578,779 + SMc02727 0.37 +0.9 2,578,853 + SMc02727 0.44 +0.0 2,578,854 - SMc02727 0.44 -0.9 2,579,117 + SMc02727 0.71 -0.5 2,579,117 + SMc02727 0.71 -1.1 2,579,118 - SMc02727 0.71 +0.9 2,579,118 - SMc02727 0.71 +0.2
Or see this region's nucleotide sequence