Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02717 and SMc02718 are separated by 100 nucleotides SMc02718 and SMc02719 are separated by 233 nucleotides SMc02719 and SMc02720 are separated by 172 nucleotides
SMc02717: SMc02717 - 2-isopropylmalate synthase, at 2,564,972 to 2,566,681
SMc02717
SMc02718: SMc02718 - hypothetical protein, at 2,566,782 to 2,566,919
SMc02718
SMc02719: SMc02719 - transposase, at 2,567,153 to 2,568,304
SMc02719
SMc02720: SMc02720 - ATP-dependent Clp protease proteolytic subunit, at 2,568,477 to 2,569,064
SMc02720
Position (kb)
2567
2568
2569 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1 at 2566.269 kb on + strand, within SMc02717 at 2566.269 kb on + strand, within SMc02717 at 2566.270 kb on - strand, within SMc02717 at 2566.299 kb on - strand, within SMc02717 at 2566.558 kb on + strand at 2566.559 kb on - strand at 2566.559 kb on - strand at 2566.626 kb on + strand at 2566.627 kb on - strand at 2566.709 kb on + strand at 2566.866 kb on + strand, within SMc02718 at 2566.866 kb on + strand, within SMc02718 at 2566.978 kb on + strand at 2566.979 kb on - strand at 2566.980 kb on + strand at 2566.981 kb on - strand at 2567.037 kb on + strand at 2567.038 kb on - strand at 2567.038 kb on - strand at 2568.094 kb on - strand, within SMc02719 at 2568.479 kb on - strand at 2568.521 kb on - strand at 2568.521 kb on - strand at 2568.521 kb on - strand at 2568.550 kb on + strand, within SMc02720 at 2568.757 kb on + strand, within SMc02720 at 2568.757 kb on + strand, within SMc02720 at 2568.758 kb on - strand at 2568.758 kb on - strand, within SMc02720 at 2569.101 kb on - strand at 2569.101 kb on - strand at 2569.151 kb on + strand at 2569.151 kb on + strand at 2569.152 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 2,566,269 + SMc02717 0.76 -4.1 2,566,269 + SMc02717 0.76 -4.8 2,566,270 - SMc02717 0.76 -2.6 2,566,299 - SMc02717 0.78 -1.7 2,566,558 + -4.6 2,566,559 - -0.7 2,566,559 - -6.7 2,566,626 + -3.0 2,566,627 - -2.3 2,566,709 + -4.5 2,566,866 + SMc02718 0.61 -0.2 2,566,866 + SMc02718 0.61 +0.2 2,566,978 + -0.3 2,566,979 - +0.4 2,566,980 + +0.2 2,566,981 - -0.5 2,567,037 + -0.2 2,567,038 - -1.0 2,567,038 - +0.3 2,568,094 - SMc02719 0.82 +0.5 2,568,479 - -0.4 2,568,521 - -0.0 2,568,521 - +0.3 2,568,521 - +0.8 2,568,550 + SMc02720 0.12 +0.5 2,568,757 + SMc02720 0.48 -0.2 2,568,757 + SMc02720 0.48 +1.1 2,568,758 - -0.1 2,568,758 - SMc02720 0.48 -0.6 2,569,101 - -0.5 2,569,101 - -0.4 2,569,151 + +0.4 2,569,151 + +0.2 2,569,152 - -0.0
Or see this region's nucleotide sequence