Strain Fitness in Sinorhizobium meliloti 1021 around SMc02719

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02717 and SMc02718 are separated by 100 nucleotidesSMc02718 and SMc02719 are separated by 233 nucleotidesSMc02719 and SMc02720 are separated by 172 nucleotides SMc02717: SMc02717 - 2-isopropylmalate synthase, at 2,564,972 to 2,566,681 SMc02717 SMc02718: SMc02718 - hypothetical protein, at 2,566,782 to 2,566,919 SMc02718 SMc02719: SMc02719 - transposase, at 2,567,153 to 2,568,304 SMc02719 SMc02720: SMc02720 - ATP-dependent Clp protease proteolytic subunit, at 2,568,477 to 2,569,064 SMc02720 Position (kb) 2567 2568 2569Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 2566.269 kb on + strand, within SMc02717at 2566.269 kb on + strand, within SMc02717at 2566.270 kb on - strand, within SMc02717at 2566.299 kb on - strand, within SMc02717at 2566.558 kb on + strandat 2566.559 kb on - strandat 2566.559 kb on - strandat 2566.626 kb on + strandat 2566.627 kb on - strandat 2566.709 kb on + strandat 2566.866 kb on + strand, within SMc02718at 2566.866 kb on + strand, within SMc02718at 2566.978 kb on + strandat 2566.979 kb on - strandat 2566.980 kb on + strandat 2566.981 kb on - strandat 2567.037 kb on + strandat 2567.038 kb on - strandat 2567.038 kb on - strandat 2568.094 kb on - strand, within SMc02719at 2568.479 kb on - strandat 2568.521 kb on - strandat 2568.521 kb on - strandat 2568.521 kb on - strandat 2568.550 kb on + strand, within SMc02720at 2568.757 kb on + strand, within SMc02720at 2568.757 kb on + strand, within SMc02720at 2568.758 kb on - strandat 2568.758 kb on - strand, within SMc02720at 2569.101 kb on - strandat 2569.101 kb on - strandat 2569.151 kb on + strandat 2569.151 kb on + strandat 2569.152 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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2,566,269 + SMc02717 0.76 -4.1
2,566,269 + SMc02717 0.76 -4.8
2,566,270 - SMc02717 0.76 -2.6
2,566,299 - SMc02717 0.78 -1.7
2,566,558 + -4.6
2,566,559 - -0.7
2,566,559 - -6.7
2,566,626 + -3.0
2,566,627 - -2.3
2,566,709 + -4.5
2,566,866 + SMc02718 0.61 -0.2
2,566,866 + SMc02718 0.61 +0.2
2,566,978 + -0.3
2,566,979 - +0.4
2,566,980 + +0.2
2,566,981 - -0.5
2,567,037 + -0.2
2,567,038 - -1.0
2,567,038 - +0.3
2,568,094 - SMc02719 0.82 +0.5
2,568,479 - -0.4
2,568,521 - -0.0
2,568,521 - +0.3
2,568,521 - +0.8
2,568,550 + SMc02720 0.12 +0.5
2,568,757 + SMc02720 0.48 -0.2
2,568,757 + SMc02720 0.48 +1.1
2,568,758 - -0.1
2,568,758 - SMc02720 0.48 -0.6
2,569,101 - -0.5
2,569,101 - -0.4
2,569,151 + +0.4
2,569,151 + +0.2
2,569,152 - -0.0

Or see this region's nucleotide sequence