Strain Fitness in Sinorhizobium meliloti 1021 around SMc02510

Experiment: D-Glucose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMc02511 and SMc02510 are separated by 6 nucleotidesSMc02510 and SMc02509 are separated by 121 nucleotides SMc02511: SMc02511 - hypothetical protein, at 3,282,467 to 3,283,372 SMc02511 SMc02510: SMc02510 - ferric uptake regulation protein, at 3,283,379 to 3,283,807 SMc02510 SMc02509: SMc02509 - iron-binding periplasmic ABC transporter protein, at 3,283,929 to 3,284,834 SMc02509 Position (kb) 3283 3284Strain fitness (log2 ratio) -1 0 1at 3282.426 kb on - strandat 3282.426 kb on - strandat 3282.536 kb on + strandat 3282.537 kb on - strandat 3282.965 kb on + strand, within SMc02511at 3282.982 kb on - strand, within SMc02511at 3283.169 kb on + strand, within SMc02511at 3283.170 kb on - strand, within SMc02511at 3283.220 kb on + strand, within SMc02511at 3283.220 kb on + strand, within SMc02511at 3283.221 kb on - strand, within SMc02511at 3283.221 kb on - strand, within SMc02511at 3283.221 kb on - strand, within SMc02511at 3283.221 kb on - strand, within SMc02511at 3283.221 kb on - strand, within SMc02511at 3283.221 kb on - strand, within SMc02511at 3283.258 kb on - strand, within SMc02511at 3283.258 kb on - strand, within SMc02511at 3283.339 kb on + strandat 3283.340 kb on - strandat 3283.402 kb on - strandat 3283.624 kb on - strand, within SMc02510at 3283.904 kb on + strandat 3283.904 kb on + strandat 3283.904 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
remove
3,282,426 - +0.0
3,282,426 - +0.1
3,282,536 + +0.3
3,282,537 - -1.1
3,282,965 + SMc02511 0.55 +0.0
3,282,982 - SMc02511 0.57 -0.8
3,283,169 + SMc02511 0.77 -0.2
3,283,170 - SMc02511 0.78 -1.1
3,283,220 + SMc02511 0.83 -0.3
3,283,220 + SMc02511 0.83 +1.0
3,283,221 - SMc02511 0.83 +0.0
3,283,221 - SMc02511 0.83 +1.0
3,283,221 - SMc02511 0.83 -0.1
3,283,221 - SMc02511 0.83 -0.3
3,283,221 - SMc02511 0.83 -0.0
3,283,221 - SMc02511 0.83 -0.7
3,283,258 - SMc02511 0.87 -0.4
3,283,258 - SMc02511 0.87 +0.2
3,283,339 + -0.0
3,283,340 - -1.1
3,283,402 - -0.0
3,283,624 - SMc02510 0.57 +0.6
3,283,904 + -0.1
3,283,904 + -1.0
3,283,904 + +0.9

Or see this region's nucleotide sequence