Strain Fitness in Sinorhizobium meliloti 1021 around SMc02495

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02496 and SMc02495 are separated by 175 nucleotidesSMc02495 and SMc02494 are separated by 80 nucleotides SMc02496: SMc02496 - primosome assembly protein PriA, at 3,296,436 to 3,298,640 SMc02496 SMc02495: SMc02495 - translaldolase, at 3,298,816 to 3,299,469 SMc02495 SMc02494: SMc02494 - hypothetical protein, at 3,299,550 to 3,301,079 SMc02494 Position (kb) 3298 3299 3300Strain fitness (log2 ratio) -2 -1 0 1 2at 3298.606 kb on - strandat 3299.221 kb on - strand, within SMc02495at 3299.282 kb on - strand, within SMc02495at 3299.614 kb on + strandat 3299.615 kb on - strandat 3299.700 kb on + strandat 3299.701 kb on - strandat 3299.782 kb on + strand, within SMc02494at 3299.900 kb on - strand, within SMc02494at 3299.953 kb on + strand, within SMc02494at 3299.953 kb on + strand, within SMc02494at 3299.953 kb on + strand, within SMc02494at 3299.953 kb on + strand, within SMc02494at 3299.975 kb on - strand, within SMc02494at 3300.036 kb on - strand, within SMc02494at 3300.121 kb on + strand, within SMc02494at 3300.149 kb on + strand, within SMc02494at 3300.149 kb on + strand, within SMc02494at 3300.149 kb on + strand, within SMc02494at 3300.149 kb on + strand, within SMc02494at 3300.149 kb on + strand, within SMc02494at 3300.149 kb on + strand, within SMc02494at 3300.150 kb on - strand, within SMc02494at 3300.379 kb on - strand, within SMc02494at 3300.469 kb on + strand, within SMc02494at 3300.469 kb on + strand, within SMc02494

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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3,298,606 - -0.2
3,299,221 - SMc02495 0.62 +1.1
3,299,282 - SMc02495 0.71 +0.5
3,299,614 + +0.0
3,299,615 - -1.5
3,299,700 + -0.0
3,299,701 - +0.5
3,299,782 + SMc02494 0.15 -2.6
3,299,900 - SMc02494 0.23 -0.5
3,299,953 + SMc02494 0.26 +0.1
3,299,953 + SMc02494 0.26 +0.4
3,299,953 + SMc02494 0.26 +0.2
3,299,953 + SMc02494 0.26 -0.8
3,299,975 - SMc02494 0.28 -0.8
3,300,036 - SMc02494 0.32 -0.5
3,300,121 + SMc02494 0.37 -0.4
3,300,149 + SMc02494 0.39 -0.9
3,300,149 + SMc02494 0.39 +0.6
3,300,149 + SMc02494 0.39 +0.5
3,300,149 + SMc02494 0.39 +2.1
3,300,149 + SMc02494 0.39 +0.4
3,300,149 + SMc02494 0.39 -1.1
3,300,150 - SMc02494 0.39 -1.0
3,300,379 - SMc02494 0.54 -0.5
3,300,469 + SMc02494 0.60 -1.0
3,300,469 + SMc02494 0.60 -0.2

Or see this region's nucleotide sequence