Strain Fitness in Sinorhizobium meliloti 1021 around SMc02405

Experiment: D-Glucose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMc02404 and SMc02405 overlap by 1 nucleotidesSMc02405 and SMc02406 are separated by 587 nucleotides SMc02404: SMc02404 - dihydrodipicolinate synthase, at 1,156,180 to 1,157,064 SMc02404 SMc02405: SMc02405 - SsrA-binding protein, at 1,157,064 to 1,157,543 SMc02405 SMc02406: SMc02406 - hypothetical protein, at 1,158,131 to 1,162,366 SMc02406 Position (kb) 1157 1158Strain fitness (log2 ratio) -2 -1 0 1at 1156.148 kb on + strandat 1157.564 kb on + strandat 1157.564 kb on + strandat 1157.564 kb on + strandat 1157.564 kb on + strandat 1157.564 kb on + strandat 1157.565 kb on - strandat 1157.566 kb on + strandat 1157.566 kb on + strandat 1157.566 kb on + strandat 1157.567 kb on - strandat 1157.567 kb on - strandat 1157.567 kb on - strandat 1157.841 kb on + strandat 1157.841 kb on + strandat 1157.993 kb on + strandat 1157.993 kb on + strandat 1157.993 kb on + strandat 1158.090 kb on + strandat 1158.091 kb on - strandat 1158.164 kb on + strandat 1158.171 kb on + strandat 1158.172 kb on - strandat 1158.219 kb on + strandat 1158.228 kb on + strandat 1158.249 kb on + strandat 1158.249 kb on + strandat 1158.249 kb on + strandat 1158.250 kb on - strandat 1158.250 kb on - strandat 1158.348 kb on + strandat 1158.348 kb on + strandat 1158.348 kb on + strandat 1158.348 kb on + strandat 1158.351 kb on - strandat 1158.351 kb on - strandat 1158.451 kb on + strandat 1158.451 kb on + strandat 1158.518 kb on - strandat 1158.518 kb on - strandat 1158.518 kb on - strandat 1158.520 kb on + strandat 1158.521 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
remove
1,156,148 + -0.6
1,157,564 + -0.9
1,157,564 + -0.6
1,157,564 + +1.6
1,157,564 + -0.7
1,157,564 + -2.2
1,157,565 - +0.4
1,157,566 + -0.1
1,157,566 + +0.3
1,157,566 + +0.1
1,157,567 - +0.3
1,157,567 - +0.2
1,157,567 - -0.9
1,157,841 + +0.1
1,157,841 + -0.0
1,157,993 + -0.5
1,157,993 + +0.5
1,157,993 + +0.1
1,158,090 + +0.6
1,158,091 - -1.4
1,158,164 + -0.0
1,158,171 + +0.6
1,158,172 - +0.1
1,158,219 + -0.1
1,158,228 + -0.3
1,158,249 + -0.5
1,158,249 + -0.7
1,158,249 + +0.2
1,158,250 - +0.2
1,158,250 - -0.2
1,158,348 + +0.3
1,158,348 + -0.1
1,158,348 + +1.6
1,158,348 + -0.3
1,158,351 - +0.4
1,158,351 - +0.7
1,158,451 + -0.4
1,158,451 + -1.2
1,158,518 - -0.2
1,158,518 - -0.3
1,158,518 - -0.8
1,158,520 + -0.7
1,158,521 - -0.8

Or see this region's nucleotide sequence