Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02403 and SMc02404 are separated by 296 nucleotides SMc02404 and SMc02405 overlap by 1 nucleotides
SMc02403: SMc02403 - murein transglycosylase, at 1,153,838 to 1,155,883
SMc02403
SMc02404: SMc02404 - dihydrodipicolinate synthase, at 1,156,180 to 1,157,064
SMc02404
SMc02405: SMc02405 - SsrA-binding protein, at 1,157,064 to 1,157,543
SMc02405
Position (kb)
1156
1157
1158 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1155.227 kb on + strand, within SMc02403 at 1155.227 kb on + strand, within SMc02403 at 1155.227 kb on + strand, within SMc02403 at 1155.227 kb on + strand, within SMc02403 at 1155.614 kb on + strand, within SMc02403 at 1155.615 kb on - strand, within SMc02403 at 1155.615 kb on - strand, within SMc02403 at 1155.619 kb on + strand, within SMc02403 at 1155.727 kb on + strand at 1155.728 kb on - strand at 1155.728 kb on - strand at 1155.788 kb on + strand at 1155.927 kb on + strand at 1155.928 kb on - strand at 1155.928 kb on - strand at 1155.928 kb on - strand at 1156.148 kb on + strand at 1157.564 kb on + strand at 1157.564 kb on + strand at 1157.564 kb on + strand at 1157.564 kb on + strand at 1157.564 kb on + strand at 1157.565 kb on - strand at 1157.566 kb on + strand at 1157.566 kb on + strand at 1157.566 kb on + strand at 1157.567 kb on - strand at 1157.567 kb on - strand at 1157.567 kb on - strand at 1157.841 kb on + strand at 1157.841 kb on + strand at 1157.993 kb on + strand at 1157.993 kb on + strand at 1157.993 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 1,155,227 + SMc02403 0.68 -1.4 1,155,227 + SMc02403 0.68 -0.9 1,155,227 + SMc02403 0.68 -0.0 1,155,227 + SMc02403 0.68 +2.6 1,155,614 + SMc02403 0.87 -1.0 1,155,615 - SMc02403 0.87 -0.8 1,155,615 - SMc02403 0.87 -1.8 1,155,619 + SMc02403 0.87 -0.5 1,155,727 + -1.7 1,155,728 - -1.5 1,155,728 - -0.7 1,155,788 + +0.1 1,155,927 + -0.9 1,155,928 - +0.5 1,155,928 - +0.1 1,155,928 - -0.8 1,156,148 + -0.6 1,157,564 + -0.9 1,157,564 + -0.6 1,157,564 + +1.6 1,157,564 + -0.7 1,157,564 + -2.2 1,157,565 - +0.4 1,157,566 + -0.1 1,157,566 + +0.3 1,157,566 + +0.1 1,157,567 - +0.3 1,157,567 - +0.2 1,157,567 - -0.9 1,157,841 + +0.1 1,157,841 + -0.0 1,157,993 + -0.5 1,157,993 + +0.5 1,157,993 + +0.1
Or see this region's nucleotide sequence